PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000038.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 694aa    MW: 76144.8 Da    PI: 8.0412
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000038.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.94e-16320379155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Itr_sc000038.1_g00008.1 320 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 379
                              78*******************988886678446*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-16320389IPR016177DNA-binding domain
CDDcd000187.69E-22320387No hitNo description
PfamPF008479.7E-13320379IPR001471AP2/ERF domain
SMARTSM003803.8E-29321393IPR001471AP2/ERF domain
PROSITE profilePS5103219.203321387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-16321388IPR001471AP2/ERF domain
PRINTSPR003678.1E-5322333IPR001471AP2/ERF domain
PRINTSPR003678.1E-5369389IPR001471AP2/ERF domain
SMARTSM003800.0012423536IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-5505530IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MIVLKETQVL GTQEKVGPRG GDSEGGKMKS MNDHNSCGGN NNNANNNSQL LGFSLSPTMK  60
MDAYTATSAP TSFYHSLSPL HSSGLCYSVG EMGAFHSPLS AMPLKSDGSL CIMEAFSRSQ  120
TRSMVPNSSP KLEDFLGGAT MGDGQYGSHE REAGILSLDS IYYTPQDVEQ EAARQRSLGF  180
HQEPQNHHSY YSNLQCHGFY LQPLEGEPKQ SHQLDCGTQI AQMPGNELKN WASVELFGQQ  240
APEQQQIATT TTALGCNELQ PLSLSMSPGS QSSCVTAARQ ISPTDLECVA MDCKKRASGK  300
VAPKQPTHRK SLDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY  360
DMEEKAARAY DLAALKYWGP STHINFPLEN YQKELEEMKN MTRQEYVAHL RRKSSGFSRG  420
ASIYRGVTRS LTFAPSTWTL AGANRPSCRK QGPLSRDLQF ALAGSRDDHG SVRTGRFEPN  480
RLLFQPNRNR NLEAIAMFSP YGPCTQEEAA EAYDIAAIKF RGISAVTNFD ISRYDVDKIL  540
ASNSPAAGEL SRRNKEAAVE YNQENNSTGA VSDWKMALYQ STDQAQQEQQ NASFGSNHQK  600
PIFSMAAQNL IGMDSSIIPS VQTHLISNPS SQISSLSNSR EASPDKTGVS SETKFLIPTT  660
NNVNAAAAAA ISSSRSPIPL SMAHLPLFAA WNHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174774.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A061FFL00.0A0A061FFL0_THECC; Integrase-type DNA-binding superfamily protein
STRINGEOY156530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-115AP2 family protein