PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000030.1_g00032.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 150aa MW: 16890.1 Da PI: 8.9528

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000030.1_g00032.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44	2.8e-14	56	96	5	45
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++s rqv fskRr ++ KA+EL++LC++ v i+ s gk Itr_sc000030.1_g00032.1 56 EDSHRQVAFSKRRIDLFNKASELCILCNMHVVAIMESYGGK 96 7899*******************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-7	39	104	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.792	44	96	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.9E-6	46	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.07E-16	54	123	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.7E-14	56	101	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.9E-6	66	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.9E-6	81	102	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MDLGRSLNSV PALTPILGGQ IGHSRLKKSK SKSKEGLAQG RREEANSRLP EDRDQEDSHR 60 QVAFSKRRID LFNKASELCI LCNMHVVAIM ESYGGKHVFT FGHPSTHSVI ERYLSKTQCP 120 ASQESEDTTT REELKNKAAL RADEICFYLK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Bra026764.1-P	1e-17	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2134	22	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	6e-18	AGAMOUS-like 61