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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000016.1_g00031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 651aa MW: 72426.8 Da PI: 10.3634 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.7e-10 | 10 | 61 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 + rW+t+E++ll+ avk++G ++W+++a ++ +t+ c++++++ Itr_sc000016.1_g00031.1 10 KSRWSTWEELLLAFAVKRHGLKDWESVAMEVRtrtslpDLLTAQVCREKYRD 61 689*****************************88888866788888888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-7 | 4 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.795 | 5 | 63 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.09E-6 | 7 | 68 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-6 | 9 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-9 | 10 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.66E-6 | 12 | 62 | No hit | No description |
SMART | SM00297 | 1.6E-14 | 306 | 411 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 8.77E-18 | 312 | 413 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 1.3E-16 | 315 | 415 | IPR001487 | Bromodomain |
CDD | cd04369 | 5.86E-17 | 316 | 406 | No hit | No description |
Pfam | PF00439 | 2.8E-10 | 318 | 396 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 11.519 | 321 | 392 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 651 aa Download sequence Send to blast |
MSKLTEAKKK SRWSTWEELL LAFAVKRHGL KDWESVAMEV RTRTSLPDLL TAQVCREKYR 60 DLHRRFMNSE ELAVDVDAGG GGGVDIPWLE KLRQLRVTEL KQEVHRYDLS IQSLQLKVKR 120 MEEERDHSLK ESQNDAVKPD LEEDRKEKRS ENDEKNGDGE TPEKASGKSV SVTESEHENR 180 SFNESNSTEN RGTEEKAEPL SIEGGETKPD PQTKPVGEED SCNDSSDRRE ESNRTQDRKS 240 ENELAAETRD SVGASKESSD VQSTASLTKK RRKRADLSGG DGGNAATAAA AAAAAASPAT 300 ATKRESAVKS EPFVGLLDII RSRKHASMFE RRLDSQKTER YKSMIRRHVD FGTVQARIDD 360 GFYSGCPMSF YLDLLLLFNN AIVFFPKSSP EWRAAQQLRD IVTKELRNYR SEQPSSAKVE 420 PEQPKLERPD NSLVVKQKST APIVVCRKRS SFSGKAAGSG NKQENEKSPL NPKTAVNKSS 480 PSTPPEDDDS SKKMKPNEKP VTGVRSMRRT TKGRPAANAA SQSTNVKKSG GTTTNKQEAS 540 KMEEETSSVD KKRGAADFLK RIKKNSATKD TVVENKRVQQ KRKAGTEERR VVPPVKEAKV 600 VENSPSKRSV GRPAKRGREA ATSPPAGKRG KETNSASKEG SSKRPQKRSR R |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 272 | KKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019159340.1 | 0.0 | PREDICTED: serine/threonine-protein kinase PRP4 homolog | ||||
TrEMBL | A0A1S3YW84 | 0.0 | A0A1S3YW84_TOBAC; uncharacterized protein LOC107780269 | ||||
STRING | XP_009602840.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4268 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 1e-104 | DNA-binding bromodomain-containing protein |