PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han006460
Common NameHAM2
Organism
Helianthus annuus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27525.5 Da    PI: 9.3675
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Han#S38818817PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.81.2e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++s t+kl+ey+s
  Han006460  9 KKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYIS 59
               68***********************************************86 PP
2K-box78.51.6e-2671169199
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                yqk+sg++l++++++++q el++ k+ ++nL++++R++lG++Le+Ls++eL  Le++ ++++  iR++K +++ +++e+++kk +++q+  k+L ++++
  Han006460  71 YQKASGVDLWNSHYQKMQDELRQQKEVNRNLRKQIRQRLGDCLEDLSFEELLALEKDSQEAVYVIRERKLKVIGNKVETSKKKVRSAQDVYKKLMHEFD 169
                899*******************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.319161IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.63E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-35395IPR002100Transcription factor, MADS-box
PfamPF003195.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-263859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-1582168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.86584174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MARGKIQIKK IENSTNRQVT YSKRRNGLFK KASELTVLCD AKVSIIMVSC TDKLHEYISP  60
SITMKQFFDQ YQKASGVDLW NSHYQKMQDE LRQQKEVNRN LRKQIRQRLG DCLEDLSFEE  120
LLALEKDSQE AVYVIRERKL KVIGNKVETS KKKVRSAQDV YKKLMHEFDI RGEDPQYGLI  180
ENGIEYDNVY GYPQMGAPPH ILTLRLQPDH PNNLHGSVTT TGPTASDLTT YGLAWLAIS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022038766.11e-175floral homeotic protein DEFICIENS-like
SwissprotP237062e-97DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLA6N6751e-179A6N675_HELAN; MADS-box transcription factor HAM2
STRINGEOY149061e-101(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]