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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Han004825 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | HSF | ||||||||
Protein Properties | Length: 299aa MW: 34200.3 Da PI: 7.756 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.8 | 9.8e-35 | 53 | 144 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+++++ed++++ ++sws++ nsfvv+d+++f++++LpkyFkhsnf+SF+RQLn+YgF+kv+ ++ weF+++ F g+++ll++i+ Han004825 53 FLTKTFDMVEDPATDAVVSWSRERNSFVVWDSHKFSTNLLPKYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRHLLKTIR 140 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ Han004825 141 RRRN 144 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.0E-38 | 46 | 137 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-33 | 49 | 142 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-59 | 49 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 53 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.2E-31 | 53 | 142 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 92 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-19 | 104 | 116 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEFNTNLQPK PTVKEEEITF ISSATTVTAT GSSSSSSSPR PKEGLHEVGP PPFLTKTFDM 60 VEDPATDAVV SWSRERNSFV VWDSHKFSTN LLPKYFKHSN FSSFIRQLNT YGFRKVDPDR 120 WEFANEGFLG GQRHLLKTIR RRRNVVPLAQ PKHEFGPCIE VGQYGIEEEL EGLKRDRSVL 180 MAEIVRLRQL QQQSKDKLIS MENRLRTTER KKQNMMGFLA KAFSNPEFLQ KYMEKYAHRE 240 KEQIEVGRKR RLTMTPSVEN LQEVGGPDGD IGIESIQDPF LAATVEGDSS SYVGNQDEX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-25 | 51 | 146 | 18 | 124 | Heat shock factor protein 1 |
5d5u_B | 3e-25 | 51 | 142 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-25 | 51 | 142 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-25 | 51 | 142 | 27 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022001702.1 | 0.0 | heat shock factor protein HSF30-like isoform X2 | ||||
Swissprot | P41152 | 1e-112 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | A0A251SU70 | 0.0 | A0A251SU70_HELAN; Putative heat shock factor protein HSF30 | ||||
STRING | EMJ24510 | 1e-119 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-105 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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