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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han003250 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 211aa MW: 24639.9 Da PI: 6.6887 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngi+KKA+E+ vLCda+v+++i++s+gk+yey+s Han003250 24 KRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCS 74 79***********************************************96 PP | |||||||
2 | K-box | 79.7 | 7.1e-27 | 86 | 176 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 yq+ sg++l++ak+e+lq+e++++kke+e++q e+Rhl+Ged++sL+++eL e++Le++l++iR+kK+e+ + ++k+e+ l+eenk L Han003250 86 YQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEDITSLNYEELIGYEDALENGLTNIREKKDEIP----KIMRKREQVLEEENKHLM 176 7899******************************************************************985....679999999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-38 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.357 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.28E-39 | 17 | 95 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-36 | 17 | 111 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-28 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-22 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-28 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-28 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-18 | 97 | 176 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.914 | 99 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
XLAGIVTEAI ERGEGMGRGK IEIKRIENTS NRQVTYSKRK NGIIKKAKEI TVLCDANVSL 60 VIYGSSGKMY EYCSPKTNLI DMLDRYQRLS GNKLWDAKHE NLQNEIDRIK KENESMQIEL 120 RHLKGEDITS LNYEELIGYE DALENGLTNI REKKDEIPKI MRKREQVLEE ENKHLMYLVQ 180 QSEMAAMGDY QQHEPFSFRV QPMQPNLHER M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-17 | 16 | 90 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 5e-17 | 16 | 90 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 5e-17 | 16 | 90 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 5e-17 | 16 | 90 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in petals and stamens, less in carpels and sepals. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the genetic control of flower development. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022019591.1 | 1e-143 | floral homeotic protein PMADS 2-like | ||||
Swissprot | Q07474 | 2e-98 | MADS2_PETHY; Floral homeotic protein PMADS 2 | ||||
TrEMBL | A0A251VI85 | 1e-142 | A0A251VI85_HELAN; Putative floral homeotic protein PMADS 2 | ||||
STRING | XP_009803901.1 | 1e-99 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 5e-83 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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