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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Han000927 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | HSF | ||||||||||||
Protein Properties | Length: 371aa MW: 43857.6 Da PI: 5.2946 | ||||||||||||
Description | HSF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.3 | 1.4e-34 | 72 | 164 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Flkk++e+++d++++++isws+++nsf+++d+++f++++Lp+ Fkh+nf+SFvRQLn+Y Fkk++ ++ weF+++ F+kgkk+ll++ik Han000927 72 FLKKTFEMVDDPTTDSIISWSSSKNSFILWDPHKFSTDLLPQRFKHNNFSSFVRQLNTYRFKKIDPDR---------WEFANEFFQKGKKHLLRDIK 159 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r++++ Han000927 160 RRTNQ 164 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.8E-37 | 68 | 161 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.27E-33 | 68 | 161 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-53 | 68 | 161 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.5E-30 | 72 | 161 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-16 | 72 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-16 | 110 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 111 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.3E-16 | 123 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MAGVVKEFDS SHDMFKVREE PKVVFNNKDL SEEMMKIKEE PMLVFDEHED FVGGEEAPKP 60 IEGLRDGGPP PFLKKTFEMV DDPTTDSIIS WSSSKNSFIL WDPHKFSTDL LPQRFKHNNF 120 SSFVRQLNTY RFKKIDPDRW EFANEFFQKG KKHLLRDIKR RTNQPQNTQK QEEIRKQEQQ 180 QCCGHQTNST METELKNLRK ERITLKQEIL KMKQQQENTE KHLEMVEERM LRMEFKQQQL 240 LVFMSKAFRN PIFVKLLQHL VQKQKTGSVE MCKKRKLEQM LNTDDLDRFQ EMWNMIEPDA 300 YTVLSSDGSV SPPEDQNTSD KSGSNGSDYN SESFILWEKL MEDELIFGGE QSGKDQTETY 360 LQEWEELIPK A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-21 | 53 | 162 | 10 | 130 | Heat shock factor protein 1 |
5d5v_B | 2e-21 | 53 | 162 | 10 | 130 | Heat shock factor protein 1 |
5d5v_D | 2e-21 | 53 | 162 | 10 | 130 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021990559.1 | 0.0 | heat shock factor protein HSF30-like | ||||
TrEMBL | Q84YG9 | 0.0 | Q84YG9_HELAN; Heat stress transcription factor HSFA9 | ||||
STRING | XP_009606363.1 | 1e-105 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 7e-56 | heat shock transcription factor A2 |
Publications ? help Back to Top | |||
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