PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Han000415 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
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Family | bZIP | ||||||||||||||||
Protein Properties | Length: 228aa MW: 24812.7 Da PI: 6.3677 | ||||||||||||||||
Description | bZIP family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 62.8 | 6.4e-20 | 134 | 196 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq NRe+ArrsR RK+ae+e L+ v++ +eN++L++el++l++ + kl++e+ Han000415 134 ERELKRQKRKQDNRESARRSRMRKQAECEALQATVETRNNENHSLRDELQRLSEACGKLTAEN 196 89*********************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-16 | 129 | 193 | No hit | No description |
Pfam | PF00170 | 5.4E-17 | 134 | 196 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 2.5E-16 | 134 | 198 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.254 | 136 | 199 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.5E-11 | 137 | 192 | No hit | No description |
CDD | cd14702 | 7.81E-18 | 139 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
EFGHYGLXTG KVKVNKKSKG SCGNVNDTGV RVGESGKTAS SSGNDGATQS AESGNNGSSD 60 ANDEDTQQEH SGSKKGSFHQ MLADANARNN NHVASMPATT NLYMGMNMWT PPTGSVSQPV 120 TPPPVMADRW VQDERELKRQ KRKQDNRESA RRSRMRKQAE CEALQATVET RNNENHSLRD 180 ELQRLSEACG KLTAENDSIK DELTRSIGPE AVTKPDAQLE SQTNEGDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 157 | RRSRMRKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in both light and dark grown leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021992617.1 | 1e-156 | G-box-binding factor 1-like isoform X2 | ||||
Swissprot | P42774 | 3e-50 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A251T733 | 1e-155 | A0A251T733_HELAN; Putative basic-leucine zipper domain, G-box binding protein, multifunctional mosaic region | ||||
STRING | XP_004143501.1 | 2e-72 | (Cucumis sativus) | ||||
STRING | XP_004172454.1 | 2e-72 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 1e-52 | G-box binding factor 1 |