PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038009.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23903.6 Da    PI: 8.024
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038009.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.32.1e-23955147
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          k+ien+snr vt++kR++gi+KKA E+ +LCd++v++ii+s +gk+ 
  HL.SW.v1.0.G038009.1  9 KKIENTSNRAVTYAKRKAGIFKKAREIAILCDVKVSLIIVSGSGKMD 55
                          68******************************************996 PP
2K-box57.27.5e-2071168199
                 K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                           y+k+s+++l+ ak+e+l++e++ +kke+en+  e+Rhl G+d++ L++ eL  +e++Le++l ++R++K+el+    ++   ke+e+++
  HL.SW.v1.0.G038009.1  71 YHKHSKEKLWPAKHENLYNEIEMVKKENENMVIELRHLNGQDIN-LNHYELIPIEEALENGLLSVRARKSELVNILRQNIEAKEEEHKR 158
                           78999999***********************************6.9******************************************* PP

                 K-box  90 enkaLrkkle 99 
                              +L++k+e
  HL.SW.v1.0.G038009.1 159 LICELHQKME 168
                           *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.221161IPR002100Transcription factor, MADS-box
CDDcd002657.87E-31280No hitNo description
SuperFamilySSF554551.96E-28295IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-191054IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-213859IPR002100Transcription factor, MADS-box
PfamPF014861.6E-1083159IPR002487Transcription factor, K-box
PROSITE profilePS5129710.77184169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRGKIEIKK IENTSNRAVT YAKRKAGIFK KAREIAILCD VKVSLIIVSG SGKMDAMCSP  60
DNSLSTICEE YHKHSKEKLW PAKHENLYNE IEMVKKENEN MVIELRHLNG QDINLNHYEL  120
IPIEEALENG LLSVRARKSE LVNILRQNIE AKEEEHKRLI CELHQKMEIV GDGYHHDQRV  180
NLRDYNAHMP LAFRVQPMQP NLQDRI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023536339.12e-80floral homeotic protein PMADS 2-like isoform X1
SwissprotQ074745e-74MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A2P5F1B33e-83A0A2P5F1B3_TREOI; MADS-box transcription factor
STRINGXP_009358735.12e-79(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-59MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]