PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G033943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | B3 | ||||||||
Protein Properties | Length: 226aa MW: 25585.8 Da PI: 9.5908 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.4e-12 | 143 | 208 | 17 | 86 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 +p++ h+g+k e+ +++l+ +++ W vk++ +k + r+++++GWk+F ++n+Lk++D + F+l+ g HL.SW.v1.0.G033943.1 143 LIPRSV---HKGVKFEP-DMKLQYHNSKLWPVKISTWKDG-RCFISSGWKQFRQENDLKANDKCKFELVlG 208 455554...45666555.9***************988885.899***********************8733 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 7.218 | 1 | 46 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-4 | 2 | 46 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.55E-6 | 2 | 64 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-16 | 123 | 210 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-17 | 124 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.57E-12 | 126 | 206 | No hit | No description |
PROSITE profile | PS50863 | 10.405 | 127 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-7 | 128 | 216 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.6E-11 | 141 | 208 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
LIPPAFVGRF ISRVPKRVVI KDTSGKCWVV ALVTVEKDLY FENGWEIYHG NSLFEVEIFG 60 GNGCKKEIVV ASPQVKVMVK EEEDTLKKKV PSSHAYNHAH IEEIGLDGST KKSSSSTKHV 120 QLKKNPCFVV TLEQSKCQVF MILIPRSVHK GVKFEPDMKL QYHNSKLWPV KISTWKDGRC 180 FISSGWKQFR QENDLKANDK CKFELVLGEG NVCKEIKVTC QSKVQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5FY27 | 5e-66 | A0A2P5FY27_TREOI; B3 DNA binding domain containing protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14322 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 5e-11 | B3 family protein |