PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G030096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 106aa MW: 12110.2 Da PI: 9.5183 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75.2 | 5.2e-24 | 9 | 55 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+ien+snr vt++kR++gi+KKA E+ +LCd++v++ii+s +gk+ HL.SW.v1.0.G030096.1 9 KKIENTSNRAVTYAKRKAGIFKKAREIAILCDVKVSLIIVSGSGKMD 55 78******************************************996 PP | |||||||
2 | K-box | 16.7 | 3e-07 | 71 | 106 | 1 | 36 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqR 36 y+k+s+++l+ ak+e+l++e++ +kke+en+ e+R HL.SW.v1.0.G030096.1 71 YHKHSKEKLWPAKHENLYNEIEMVKKENENMVIELR 106 78999999***********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.221 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-29 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-21 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-20 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-21 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-21 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MGRGKIEIKK IENTSNRAVT YAKRKAGIFK KAREIAILCD VKVSLIIVSG SGKMDAMCSP 60 DNSLSTICEE YHKHSKEKLW PAKHENLYNE IEMVKKENEN MVIELR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021902590.1 | 2e-45 | floral homeotic protein PMADS 2 | ||||
Swissprot | Q0HA25 | 7e-43 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A5JSC7 | 4e-44 | A5JSC7_CARPA; B-class MADS-box protein PI | ||||
STRING | evm.model.supercontig_26.316 | 6e-45 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 1e-40 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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