PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025989.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 307aa    MW: 34619.3 Da    PI: 8.4731
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025989.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.5e-2958108151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                           k+ien++nrqvtfskRrngi+KKA ELSvLCda+v++ii+ +++kl+ey++
  HL.SW.v1.0.G025989.1  58 KFIENQTNRQVTFSKRRNGIFKKAGELSVLCDAKVSLIIVPNNNKLHEYIT 108
                           79***********************************************86 PP
2K-box76.95.1e-26120218199
                 K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                           yq+++g++l+++++e +qq l++Lk+++ +L++++R++lG dL++Ls+ eL  Le+ +  s++ iR +Kn+ +++q e+++k++k+ +e
  HL.SW.v1.0.G025989.1 120 YQRTKGVDLWKSQYEAMQQTLRQLKAKNFELRTQIRQRLGYDLNDLSFHELSDLENSMLASVEAIRHRKNHKIKTQAETTKKRNKSWEE 208
                           78899999********************************************************************************* PP

                 K-box  90 enkaLrkkle 99 
                           +n  L +++ 
  HL.SW.v1.0.G025989.1 209 RNSVLVHEIH 218
                           *****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-3750109IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.89950110IPR002100Transcription factor, MADS-box
CDDcd002653.40E-3651129No hitNo description
SuperFamilySSF554555.23E-3451143IPR002100Transcription factor, MADS-box
PROSITE patternPS00350052106IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-245272IPR002100Transcription factor, MADS-box
PfamPF003193.9E-2359106IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-247287IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-2487108IPR002100Transcription factor, MADS-box
PfamPF014864.5E-18131217IPR002487Transcription factor, K-box
PROSITE profilePS5129713.139133223IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMSSDYKCEP IHNNSNTNAE ETQYHHPHRH RHHREEEEED HDQSNKQQKI GRGKTQIKFI  60
ENQTNRQVTF SKRRNGIFKK AGELSVLCDA KVSLIIVPNN NKLHEYITPG ANTKDMLDLY  120
QRTKGVDLWK SQYEAMQQTL RQLKAKNFEL RTQIRQRLGY DLNDLSFHEL SDLENSMLAS  180
VEAIRHRKNH KIKTQAETTK KRNKSWEERN SVLVHEIHAR CEDPPYGLVE DNEGAGYESA  240
IALATGASNL YAFRHHQNNH SALHSGGAGG GSLITTSHSA LHSGAGGGGG SGSGYDSFDL  300
RDLRLA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024180026.11e-85floral homeotic protein DEFICIENS-like
SwissprotQ003J29e-81TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2P5FNX91e-120A0A2P5FNX9_TREOI; MADS-box transcription factor
STRINGXP_004287844.12e-81(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]