PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G025794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | AP2 | ||||||||
Protein Properties | Length: 410aa MW: 46194.5 Da PI: 8.6764 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.2 | 3.6e-12 | 75 | 131 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g HL.SW.v1.0.G025794.1 75 SKYRGVSRHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDEEESAARAYDLAALKYWG 131 89*******************88887784446666.9*******************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 174 | 225 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g HL.SW.v1.0.G025794.1 174 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 225 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.82E-15 | 75 | 141 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.35E-18 | 75 | 141 | No hit | No description |
Pfam | PF00847 | 3.7E-9 | 75 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-13 | 76 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-19 | 76 | 145 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.36 | 76 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-6 | 77 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.25E-25 | 174 | 235 | No hit | No description |
Pfam | PF00847 | 5.2E-12 | 174 | 225 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 174 | 235 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-18 | 175 | 234 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-26 | 175 | 239 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 175 | 233 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.4E-6 | 215 | 235 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MKPMMVKSEN NQNCSPRRRR VSMADGEAEA ALRCVKRRRR DIPTEVVTCD DNKPQQQAQA 60 DDQASPATTT VKRSSKYRGV SRHRWTGRYE AHLWDKLSWN VTQKKKGKQG AYDEEESAAR 120 AYDLAALKYW GTSTFTNFPI SDYEKEIEIM LTVTKEEYLA TLRRKSSGFS RGVSKYRGVA 180 RHHHNGRWEA RIGRVFGNKY LYLGTYSTQE EAARAYDIAA IEYRGINAVT NFDLSTYIRW 240 LKPEAASNPV GGCESLPEVM TEPQTLRSTT NYGAPTDQDQ FPSTNPFMKS DNDYLNKYSP 300 TPPKQQVVIQ NKSPLIGSNL TRSKSSPTAL SLLLRSSMFR DLVEKNSNVS EYETDGDEPK 360 NQLQGGCSSD DDEYGGFFFD GISDIPFVCG SNRSDGMQLG QEKGIQFVL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 39 | RRRVSMADGEAEAALRCVKRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015879418.1 | 1e-180 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | A0A2P5AFV3 | 0.0 | A0A2P5AFV3_PARAD; AP2/ERF transcription factor | ||||
STRING | XP_010112091.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2198 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 1e-88 | AP2 family protein |