PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G010357.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 1142aa MW: 126676 Da PI: 9.9486

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G010357.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1.1e-08	67	102	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+ E e++++a +++G++ W+++a+ + +Rt +++ HL.SW.v1.0.G010357.1 67 QWTKGELERFYEAYRKYGKD-WRKVAAAVR-NRTVEMV 102 6***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.51E-10	63	110	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.788	63	116	IPR017884	SANT domain
SMART	SM00717	9.8E-4	64	112	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-5	67	102	IPR009057	Homeodomain-like
Pfam	PF00249	2.1E-7	67	102	IPR001005	SANT/Myb domain
CDD	cd00167	1.28E-5	68	102	No hit	No description
SMART	SM01135	8.0E-59	626	727	IPR033471	DIRP domain
Pfam	PF06584	2.0E-33	626	726	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1142 aa Download sequence Send to blast
MAPTKKSRVN KRYGSAVSYS PEKDVGILTK NKQRGSVSFS PDKDGGGGNS SKSIQRKKKL 60 SDKLGSQWTK GELERFYEAY RKYGKDWRKV AAAVRNRTVE MVEALYSMNR AYLSLPEGTA 120 SVVGLIAMMT DHYNVLEGSD SEQESNDGSG LSRKHQNRKR GRDNFNPSKD LFQSHSVAST 180 DGCLSLLKRK RSDGSQPRVV GKRTPRFPVS YSHKRDYKEN QISPNRKGKK AENDNDDAHV 240 AALALTEASQ RVGSPQVSTP YKHISSSPAQ SWERLALRSQ RLRDTSVDDD WFEGSVGSRG 300 AENGDYGKDA SSLMAMEGVG TVEVHQKGKK FYGKKENVED DDGGEACSGT EEGQNVSSLK 360 GKVDVDFSNT KVERVSPQSQ RKRSKKLFFG ESSVQLKEER TTLDTEEKSS VPEATSQVRN 420 KNKLSGAKQK VPPAISKNNG TISKKSKLGR DANGDINNDS TTAQLHSDNK LLKRRRKSLI 480 PKMSKVEARL DAILKGTFKI EDICEEESKP VIKGKRSSQT STPSKQWKSV GSSEGSLSSE 540 YNRTGSGTDL VVSTTQVPAA SHVNLPTKQR SKRKMYLPRT LPTKDIKSTE NIVKRQVNKY 600 SALAEEKLSC FLSSTMVRRW CTFEWFYSAI DYPWFSKREF EEYLNHVGLG HIPRLTRVEW 660 GVIRSSLGKP RRFSELFLRE ERKKLKQYRE SVREHYTELR TGVREGLPTD LARPLTVGQR 720 VIAIHPKTRE VHDGSVLTVD HDKCRIQFDH PDIGVEFVMD VDCMPLNPME NMPESLRRQN 780 IAIDKFSLTS KEAQPNGNFG GPVMLASSGH MEKAPTSMNT LGKHGKGDTT HSVSHLKATA 840 IDIVSSTQPI AYGQSFMVAN NQAREADIRA LSELTRALDK KEALLTELRK TNNEILENQN 900 NGDYSLKDCE MFKKHYATVS SALHDLRQRN THPGNVLLPG LKTPINSTTH SNVPGSFDNF 960 SISQDSGSNV VEIVKGSTIK AQSMVDAAIQ AFSSSKEGED AYVKIREALD SLDNKSVTSE 1020 SRVLTNKPQE QVNGTSGHRN PLISCTSEPV VAGDSSALNL RTDSEKSEAK VPSGIISSCV 1080 ASLLMIQTCT ERQYPPSEVA QILDTAVSSL YPLSSQNIQI YREIQSYMGR IKTQILALVP 1140 T*

Sequence ? help Back to Top

Protein Sequence Length: 1142 aa Download sequence Send to blast

MAPTKKSRVN KRYGSAVSYS PEKDVGILTK NKQRGSVSFS PDKDGGGGNS SKSIQRKKKL  60
SDKLGSQWTK GELERFYEAY RKYGKDWRKV AAAVRNRTVE MVEALYSMNR AYLSLPEGTA  120
SVVGLIAMMT DHYNVLEGSD SEQESNDGSG LSRKHQNRKR GRDNFNPSKD LFQSHSVAST  180
DGCLSLLKRK RSDGSQPRVV GKRTPRFPVS YSHKRDYKEN QISPNRKGKK AENDNDDAHV  240
AALALTEASQ RVGSPQVSTP YKHISSSPAQ SWERLALRSQ RLRDTSVDDD WFEGSVGSRG  300
AENGDYGKDA SSLMAMEGVG TVEVHQKGKK FYGKKENVED DDGGEACSGT EEGQNVSSLK  360
GKVDVDFSNT KVERVSPQSQ RKRSKKLFFG ESSVQLKEER TTLDTEEKSS VPEATSQVRN  420
KNKLSGAKQK VPPAISKNNG TISKKSKLGR DANGDINNDS TTAQLHSDNK LLKRRRKSLI  480
PKMSKVEARL DAILKGTFKI EDICEEESKP VIKGKRSSQT STPSKQWKSV GSSEGSLSSE  540
YNRTGSGTDL VVSTTQVPAA SHVNLPTKQR SKRKMYLPRT LPTKDIKSTE NIVKRQVNKY  600
SALAEEKLSC FLSSTMVRRW CTFEWFYSAI DYPWFSKREF EEYLNHVGLG HIPRLTRVEW  660
GVIRSSLGKP RRFSELFLRE ERKKLKQYRE SVREHYTELR TGVREGLPTD LARPLTVGQR  720
VIAIHPKTRE VHDGSVLTVD HDKCRIQFDH PDIGVEFVMD VDCMPLNPME NMPESLRRQN  780
IAIDKFSLTS KEAQPNGNFG GPVMLASSGH MEKAPTSMNT LGKHGKGDTT HSVSHLKATA  840
IDIVSSTQPI AYGQSFMVAN NQAREADIRA LSELTRALDK KEALLTELRK TNNEILENQN  900
NGDYSLKDCE MFKKHYATVS SALHDLRQRN THPGNVLLPG LKTPINSTTH SNVPGSFDNF  960
SISQDSGSNV VEIVKGSTIK AQSMVDAAIQ AFSSSKEGED AYVKIREALD SLDNKSVTSE  1020
SRVLTNKPQE QVNGTSGHRN PLISCTSEPV VAGDSSALNL RTDSEKSEAK VPSGIISSCV  1080
ASLLMIQTCT ERQYPPSEVA QILDTAVSSL YPLSSQNIQI YREIQSYMGR IKTQILALVP  1140
T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024026911.1	0.0	protein ALWAYS EARLY 2
TrEMBL	A0A2P5AMS0	0.0	A0A2P5AMS0_TREOI; Protein LIN-9/Protein ALWAYS EARLY
STRING	EMJ09328	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding