PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G001646.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 1181aa MW: 132407 Da PI: 9.6108

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G001646.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.5	2.6e-07	55	90	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G+ W+++a+ + +R+++++ HL.SW.v1.0.G001646.1 55 QWSKRELERFYEAYRKYGKV-WRKVASAIR-NRSAEMV 90 6***************88.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.74E-8	51	98	IPR009057	Homeodomain-like
SMART	SM00717	0.006	52	100	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-4	55	91	IPR009057	Homeodomain-like
Pfam	PF00249	4.1E-6	55	90	IPR001005	SANT/Myb domain
CDD	cd00167	2.78E-5	56	90	No hit	No description
Pfam	PF06584	1.0E-29	627	727	IPR033471	DIRP domain
SMART	SM01135	2.7E-48	627	728	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1181 aa Download sequence Send to blast
MIVKLRKFSM APSRKSRNGN KQLSNVNEVS PNKHGETVNR SRQKKRKLSD MLGPQWSKRE 60 LERFYEAYRK YGKVWRKVAS AIRNRSAEMV EALYSMNRAY LSLPDGTASV AGLVAMMTDH 120 YCVLGSCLLG VSLTNHCGDG QGVSDSDEES NGAGGEFHEP QKGTRGKSHN STYKGSDRTL 180 PDLSHFHSAT SHNGCLPLLK RRRSGIIPHA VRKRTPRFDV SDADKDSRDA NSDAVHKLAM 240 VMTEASQRSG SPHVSWRPNR KIEAGTPSPH QDGGRMFARP EMSGGKLRHA KVDDSASGFS 300 IGNTETNNKD YEKPRNHLMG RKGAGTENGQ EKGKNYYVKK LEDEDNVNDQ LDDIEEDCIG 360 TEKQKFNAKG RIQTEVVNVK SPRSISKDPR KRSRNSLYEG DEDSPFDALV TLANTSLMMR 420 EETADTDATF RASKLGKSKG GGPEFNAGIQ KSKQKSSPSK IHENGPQVGF HQSDNQKIEI 480 HENRPQVDFH QSDNQKIEIN DKEKRLVCKG KRSSHTSTSL QRKLVKPLVL TYSESSFKGK 540 VNNSVVLTRE VHPPNQLNIP TKARSRRKMN KQKPFITKDV KKTEKDLDDR PNLHISLFGN 600 GSLNLKEKLS TCLHQYQARR WCAFEWFYSA IDYPWFAKSE FVEYLNHVGL GHVTRLTRVE 660 WGVIRSSLGR PRRFSEQFLK EEKEKLNLYR ESVRAHYAEL RAGTSEGLST DLARPLSVQQ 720 RVISIHPRTR EIHDGTVLTV DDSRYHVQFD RPDLGVEYVM DIDCMPLNPM ENLPASFTRH 780 NDCFETFNVC KINKQPKEGK TDEYVKVVSI GNVDNNGNFY TSPSTHDICE GLRQKEGYAS 840 RSDLQAKVAS YETTTPQNKT NFQPSPLVQM QAKEADVQAI SELTRALDKK EAVVFELRRM 900 NDDVLEKEKN GDSSLKNSET FKKHYAAVSS ALLALRKRNT YQGISPLAGL NDPDGRSSSA 960 DFCLYNIQEC GSQVAEIVDT SEMKARKMVG TAMQLLLQMV GSFNHTVKLH AINNVMVKLV 1020 GAGYIIVIQA MSSLEKTGIN LMSFGEAAVF VKNRLSEEDL DMPAMRSSST YRDKVKAYPE 1080 QSPGASTPSA TCHAPDLELN GLFNQNEPKV PSELIASCLA TLLMIKRCTE RPFPPAEIAR 1140 VLDSAVTTLQ PRCSQNRSAY EEIQRLMGII RTKILALVPT *

Sequence ? help Back to Top

Protein Sequence Length: 1181 aa Download sequence Send to blast

MIVKLRKFSM APSRKSRNGN KQLSNVNEVS PNKHGETVNR SRQKKRKLSD MLGPQWSKRE  60
LERFYEAYRK YGKVWRKVAS AIRNRSAEMV EALYSMNRAY LSLPDGTASV AGLVAMMTDH  120
YCVLGSCLLG VSLTNHCGDG QGVSDSDEES NGAGGEFHEP QKGTRGKSHN STYKGSDRTL  180
PDLSHFHSAT SHNGCLPLLK RRRSGIIPHA VRKRTPRFDV SDADKDSRDA NSDAVHKLAM  240
VMTEASQRSG SPHVSWRPNR KIEAGTPSPH QDGGRMFARP EMSGGKLRHA KVDDSASGFS  300
IGNTETNNKD YEKPRNHLMG RKGAGTENGQ EKGKNYYVKK LEDEDNVNDQ LDDIEEDCIG  360
TEKQKFNAKG RIQTEVVNVK SPRSISKDPR KRSRNSLYEG DEDSPFDALV TLANTSLMMR  420
EETADTDATF RASKLGKSKG GGPEFNAGIQ KSKQKSSPSK IHENGPQVGF HQSDNQKIEI  480
HENRPQVDFH QSDNQKIEIN DKEKRLVCKG KRSSHTSTSL QRKLVKPLVL TYSESSFKGK  540
VNNSVVLTRE VHPPNQLNIP TKARSRRKMN KQKPFITKDV KKTEKDLDDR PNLHISLFGN  600
GSLNLKEKLS TCLHQYQARR WCAFEWFYSA IDYPWFAKSE FVEYLNHVGL GHVTRLTRVE  660
WGVIRSSLGR PRRFSEQFLK EEKEKLNLYR ESVRAHYAEL RAGTSEGLST DLARPLSVQQ  720
RVISIHPRTR EIHDGTVLTV DDSRYHVQFD RPDLGVEYVM DIDCMPLNPM ENLPASFTRH  780
NDCFETFNVC KINKQPKEGK TDEYVKVVSI GNVDNNGNFY TSPSTHDICE GLRQKEGYAS  840
RSDLQAKVAS YETTTPQNKT NFQPSPLVQM QAKEADVQAI SELTRALDKK EAVVFELRRM  900
NDDVLEKEKN GDSSLKNSET FKKHYAAVSS ALLALRKRNT YQGISPLAGL NDPDGRSSSA  960
DFCLYNIQEC GSQVAEIVDT SEMKARKMVG TAMQLLLQMV GSFNHTVKLH AINNVMVKLV  1020
GAGYIIVIQA MSSLEKTGIN LMSFGEAAVF VKNRLSEEDL DMPAMRSSST YRDKVKAYPE  1080
QSPGASTPSA TCHAPDLELN GLFNQNEPKV PSELIASCLA TLLMIKRCTE RPFPPAEIAR  1140
VLDSAVTTLQ PRCSQNRSAY EEIQRLMGII RTKILALVPT *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015892697.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_015892698.1	0.0	protein ALWAYS EARLY 3 isoform X1
Refseq	XP_015892700.1	0.0	protein ALWAYS EARLY 3 isoform X1
TrEMBL	A0A2P5ERY7	0.0	A0A2P5ERY7_TREOI; Protein LIN-9/Protein ALWAYS EARLY
STRING	EOY06452	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding