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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.013G167100.1 | ||||||||
Common Name | B456_013G167100, LOC105784096 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 38829.6 Da PI: 8.4334 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.4 | 6.9e-54 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Gorai.013G167100.1 15 LPPGFRFHPTDEELVVHYLKKKATSAPLPV-AIIAEVDLYKFDPWELPAKATFGEREWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKP 104 79****************************.88***************988899************************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Gorai.013G167100.1 105 VLNSkGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 *99867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-65 | 7 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 62.123 | 15 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MESNDSSTVS RQPNLPPGFR FHPTDEELVV HYLKKKATSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGERE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLNSKG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLPDNKNNNK PPGCDLGYKK NSLRLDDWVL CRIYKKNNTN 180 RPLGYEKDEA MDDMGGPVPT SMSIGSLQFQ TKGTSCGTFL ENHEHNLFDG MLGSDGVNNN 240 GSMSHLGCCS SSKPDLSMVN PLKRSTVPSL YWTDEDTASP STSKTFHGDH SNDGSLEKPD 300 TNGSISIATL LSQLPQTPHL QQQTMVGSME DGIFRPSYQL PGLNWYTLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-73 | 14 | 178 | 14 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}. | |||||
Uniprot | TISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ914141 | 0.0 | JQ914141.1 Gossypium hirsutum NAC domain protein 10 (NAC10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012465344.1 | 0.0 | PREDICTED: NAC transcription factor 25 | ||||
Swissprot | Q9LD44 | 1e-122 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A0D2VET1 | 0.0 | A0A0D2VET1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.013G167100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-120 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.013G167100.1 |
Entrez Gene | 105784096 |
Publications ? help Back to Top | |||
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