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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G198600.7 | ||||||||
Common Name | B456_011G198600, LOC105776622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 915aa MW: 102997 Da PI: 7.7409 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165.2 | 1.1e-51 | 29 | 146 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 ++e k+rwl+++ei+aiL n++ + ++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ +n Gorai.011G198600.7 29 MEEaKSRWLRPNEIHAILSNYKYFPIHVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDN 119 55669************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ptf rrcywlL+++le+ivlvhy+e+k Gorai.011G198600.7 120 PTFVRRCYWLLDKTLENIVLVHYRETK 146 ************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 78.154 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.8E-75 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.4E-46 | 31 | 144 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.4E-12 | 361 | 447 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.8E-18 | 533 | 657 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-7 | 546 | 625 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.3E-17 | 549 | 658 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.61E-15 | 551 | 655 | No hit | No description |
PROSITE profile | PS50297 | 15.99 | 563 | 667 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 1.7E-6 | 596 | 625 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.155 | 596 | 628 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2700 | 635 | 666 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 6.815 | 744 | 770 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 60 | 759 | 781 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.218 | 760 | 789 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.22 | 762 | 780 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.02 | 782 | 804 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.45 | 783 | 807 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 5.1E-4 | 784 | 803 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 10 | 862 | 884 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.242 | 864 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.15 | 864 | 884 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 915 aa Download sequence Send to blast |
MDGSGSGRLA GTEIHGFYTL EDLDVQTMME EAKSRWLRPN EIHAILSNYK YFPIHVKPVN 60 LPQSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP 120 TFVRRCYWLL DKTLENIVLV HYRETKEGSP ATPVNSNSCL TTDQSTPLLV MEDFDSGAAN 180 AYYKDLSDSI NANHEMTLHE INTLEWDELL VTNDGNDSAV SSGDMSTCFD QWNQKMVNGL 240 SNDGGPISAY NSSPDISLLD NLVDPVAQSN NAYLNTPGGV CYQTPGTEVN STVQREDSSA 300 IGMGKSLDLL INNGLESQDS FGKWINCTVT GSPCSMGDPV PESSSSSGQD SLTSPGEIFS 360 ITEVSPAWAY STEKTKILVT GVFHQAYQHL AKSNLFCVCG DVCYPVETIQ VGVYRCLLSQ 420 HAPGLVKLYM SLDGHKPISQ VLNFEYRAPL LHDPVVPLED KSRWEEFRLQ MRLAYLLFST 480 SKSLSILSGK VSPNSLKEAK KFAQKTSNIS NSWTYLIQSI EENRASFTQA KDSLFEIALK 540 NRLKDWLLER IIYGSKTTEY DAQGQGVIHL CAILGYAWAI YLFSWSGLSL DFRDKHGWTA 600 LHWAAYYGRE KMVAVLLSAG AKPNLVTDPT TQNPSGCTAA DLASLNGYDG LAAYLSEEAL 660 VAQFNDMALA GNASGSLQTS RTEATNLVNL KEDELYLRET LAAYRTAADA AARINTAFRA 720 HSFKVRAKAV ESYNAEEEAR SIIAAMKIQH AFRNYEAKRK MAAAARIQYR FRTWKMRKDF 780 LNMRRQAIKI QAAFRGFQAR RQYCKIIWSV GVLEKAILRW RLRRKGFRGL QITTDEAVEE 840 QRQETYVEEA YYISSRKQAE ERVEKAVVRV QSMFRSKKAQ QEYRRMKLAH DLATLEYESL 900 IGPLSDMMLK DHRK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588474 | 1e-118 | JX588474.1 Gossypium hirsutum clone NBRI_GE22909 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454840.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A0D2VPB6 | 0.0 | A0A0D2VPB6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G198600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G198600.7 |
Entrez Gene | 105776622 |
Publications ? help Back to Top | |||
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