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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.011G198600.6 | ||||||||
Common Name | B456_011G198600, LOC105776622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 917aa MW: 103238 Da PI: 7.7409 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 165.2 | 1.1e-51 | 29 | 146 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 ++e k+rwl+++ei+aiL n++ + ++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+ +n Gorai.011G198600.6 29 MEEaKSRWLRPNEIHAILSNYKYFPIHVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGLDN 119 55669************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ptf rrcywlL+++le+ivlvhy+e+k Gorai.011G198600.6 120 PTFVRRCYWLLDKTLENIVLVHYRETK 146 ************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.816 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.8E-75 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.4E-46 | 31 | 144 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 1.4E-12 | 363 | 449 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.8E-18 | 535 | 659 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.1E-7 | 548 | 627 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.3E-17 | 551 | 660 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.63E-15 | 553 | 657 | No hit | No description |
PROSITE profile | PS50297 | 15.99 | 565 | 669 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 12.155 | 598 | 630 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1.7E-6 | 598 | 627 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2700 | 637 | 668 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50096 | 6.815 | 746 | 772 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 60 | 761 | 783 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.218 | 762 | 791 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.22 | 764 | 782 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.02 | 784 | 806 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.45 | 785 | 809 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 5.2E-4 | 786 | 805 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 10 | 864 | 886 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.242 | 866 | 893 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.15 | 866 | 886 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 917 aa Download sequence Send to blast |
MDGSGSGRLA GTEIHGFYTL EDLDVQTMME EAKSRWLRPN EIHAILSNYK YFPIHVKPVN 60 LPQSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGLDNP 120 TFVRRCYWLL DKTLENIVLV HYRETKELQG SPATPVNSNS CLTTDQSTPL LVMEDFDSGA 180 ANAYYKDLSD SINANHEMTL HEINTLEWDE LLVTNDGNDS AVSSGDMSTC FDQWNQKMVN 240 GLSNDGGPIS AYNSSPDISL LDNLVDPVAQ SNNAYLNTPG GVCYQTPGTE VNSTVQREDS 300 SAIGMGKSLD LLINNGLESQ DSFGKWINCT VTGSPCSMGD PVPESSSSSG QDSLTSPGEI 360 FSITEVSPAW AYSTEKTKIL VTGVFHQAYQ HLAKSNLFCV CGDVCYPVET IQVGVYRCLL 420 SQHAPGLVKL YMSLDGHKPI SQVLNFEYRA PLLHDPVVPL EDKSRWEEFR LQMRLAYLLF 480 STSKSLSILS GKVSPNSLKE AKKFAQKTSN ISNSWTYLIQ SIEENRASFT QAKDSLFEIA 540 LKNRLKDWLL ERIIYGSKTT EYDAQGQGVI HLCAILGYAW AIYLFSWSGL SLDFRDKHGW 600 TALHWAAYYG REKMVAVLLS AGAKPNLVTD PTTQNPSGCT AADLASLNGY DGLAAYLSEE 660 ALVAQFNDMA LAGNASGSLQ TSRTEATNLV NLKEDELYLR ETLAAYRTAA DAAARINTAF 720 RAHSFKVRAK AVESYNAEEE ARSIIAAMKI QHAFRNYEAK RKMAAAARIQ YRFRTWKMRK 780 DFLNMRRQAI KIQAAFRGFQ ARRQYCKIIW SVGVLEKAIL RWRLRRKGFR GLQITTDEAV 840 EEQRQETYVE EAYYISSRKQ AEERVEKAVV RVQSMFRSKK AQQEYRRMKL AHDLATLEYE 900 SLIGPLSDMM LKDHRK* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX588474 | 1e-118 | JX588474.1 Gossypium hirsutum clone NBRI_GE22909 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012454834.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 | ||||
Refseq | XP_012454835.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 | ||||
Refseq | XP_012454836.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 | ||||
Refseq | XP_012454837.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 | ||||
Refseq | XP_012454838.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 | ||||
Refseq | XP_012454839.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | A0A0D2UVG0 | 0.0 | A0A0D2UVG0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.011G198600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Gorai.011G198600.6 |
Entrez Gene | 105776622 |
Publications ? help Back to Top | |||
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