PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 356aa MW: 39951.9 Da PI: 6.6891

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G183800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	283	317	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ Gorai.010G183800.1 283 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 317 569*****************************885 PP
2	ELK	41.1	3.6e-14	237	258	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ Gorai.010G183800.1 237 ELKGQLLRKYSGYLGSLKQEFM 258 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	2.4E-19	101	145	IPR005540	KNOX1
Pfam	PF03790	1.1E-21	103	141	IPR005540	KNOX1
SMART	SM01256	4.9E-27	150	201	IPR005541	KNOX2
Pfam	PF03791	4.0E-21	153	200	IPR005541	KNOX2
SMART	SM01188	2.8E-8	237	258	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	237	257	IPR005539	ELK domain
Pfam	PF03789	5.9E-11	237	258	IPR005539	ELK domain
PROSITE profile	PS50071	12.989	257	320	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-19	259	334	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-13	259	324	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-28	262	322	IPR009057	Homeodomain-like
CDD	cd00086	1.57E-12	269	321	No hit	No description
Pfam	PF05920	6.3E-17	277	316	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	295	318	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MEGGSNSTSC MMAFGHNSNG LCPMTMMHHP MTSHLHPQHQ HHHPNSGSSS LFLPQPPTNN 60 QDQNHNSSSG SSMILDDQHN TTTSNNNNTG CYFMESNDGS SSVKAKIMAH PHYHRLLAAY 120 VNCQKVGAPP EVVASLEEAC ASAATTGPTR TGCIGEDPAL DQFMEAYCEM LTKYEQELTK 180 PFKEAMLFLQ RVECQFKALT VSSPNPACGE GVDRNASSEE DVDVNNNFID PLAEDRELKG 240 QLLRKYSGYL GSLKQEFMKK RKKGKLPKEA RQQLLDWWSR HYKWPYPSES QKLALAESTG 300 LDQKQINNWF INQRKRHWKP SEDMQFVVMD AAHPHYYMDN VLGNPFPMDL SPTLL*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MEGGSNSTSC MMAFGHNSNG LCPMTMMHHP MTSHLHPQHQ HHHPNSGSSS LFLPQPPTNN  60
QDQNHNSSSG SSMILDDQHN TTTSNNNNTG CYFMESNDGS SSVKAKIMAH PHYHRLLAAY  120
VNCQKVGAPP EVVASLEEAC ASAATTGPTR TGCIGEDPAL DQFMEAYCEM LTKYEQELTK  180
PFKEAMLFLQ RVECQFKALT VSSPNPACGE GVDRNASSEE DVDVNNNFID PLAEDRELKG  240
QLLRKYSGYL GSLKQEFMKK RKKGKLPKEA RQQLLDWWSR HYKWPYPSES QKLALAESTG  300
LDQKQINNWF INQRKRHWKP SEDMQFVVMD AAHPHYYMDN VLGNPFPMDL SPTLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	261	LKQEFMKKRK
2	258	262	KKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
Uniprot	TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452844.1	0.0	PREDICTED: homeobox protein SBH1-like
Swissprot	P46608	1e-157	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A0D2UES1	0.0	A0A0D2UES1_GOSRA; Uncharacterized protein
STRING	Gorai.010G183800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6473	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-141	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Gorai.010G183800.1
Entrez Gene	105774819

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]