PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G083900.1

Common Name

B456_010G083900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 423aa MW: 48074.1 Da PI: 10.1974

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G083900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.5e-08	261	303	7	54
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ErrRR++ N+ f Lr+llP +K +Ka+iL +Y+ sL Gorai.010G083900.1 261 MSERRRREKQNEDFIALRSLLPFG-----TKKDKASILFNSRQYLTSL 303 67******************97.....7************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.249	254	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-14	256	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	260	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-12	260	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-6	261	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
SIGCSYICLW SYSSYLNPPN SLVPGFAFAN SLPYIELREL DLQNRWSNQT QRQFYQRAVF 60 MGCRSGEIEL GLSNVVQLNM EIEKTRFFPE DFPRQLSHVG DPFPQPTDLN RPSSFSSSLR 120 SLSTGSPIEP TPSSLQPMSS SIDCSCQQAM QALTQMQSNI QLPMLERENA SITRAILAVL 180 TSSTSHLPRQ NQNLPYNYLL NPKATALKRY VPRSTPPVRA SLRSQSILKR ATLFCRKLTL 240 VRRGELVLSR HPTSNQLHRM MSERRRREKQ NEDFIALRSL LPFGTKKDKA SILFNSRQYL 300 TSLKAQVAEL SKQNQLLQAR LLPAAADVGG SSNESLNVRI IPLHESTSEQ RMVDLRISVR 360 GEVLIDNILM RLLEFLRHDR NVSIMSIEAN NQLSEGSVNY INLRLRIEIL EFKLNVQFQM 420 SN*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

SIGCSYICLW SYSSYLNPPN SLVPGFAFAN SLPYIELREL DLQNRWSNQT QRQFYQRAVF  60
MGCRSGEIEL GLSNVVQLNM EIEKTRFFPE DFPRQLSHVG DPFPQPTDLN RPSSFSSSLR  120
SLSTGSPIEP TPSSLQPMSS SIDCSCQQAM QALTQMQSNI QLPMLERENA SITRAILAVL  180
TSSTSHLPRQ NQNLPYNYLL NPKATALKRY VPRSTPPVRA SLRSQSILKR ATLFCRKLTL  240
VRRGELVLSR HPTSNQLHRM MSERRRREKQ NEDFIALRSL LPFGTKKDKA SILFNSRQYL  300
TSLKAQVAEL SKQNQLLQAR LLPAAADVGG SSNESLNVRI IPLHESTSEQ RMVDLRISVR  360
GEVLIDNILM RLLEFLRHDR NVSIMSIEAN NQLSEGSVNY INLRLRIEIL EFKLNVQFQM  420
SN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	267	ERRRRE
2	263	268	RRRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016676522.1	0.0	PREDICTED: putative transcription factor bHLH041
TrEMBL	A0A0D2V7D7	0.0	A0A0D2V7D7_GOSRA; Uncharacterized protein (Fragment)
STRING	Gorai.010G083900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	5e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.010G083900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]