PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G216900.2

Common Name

B456_009G216900, LOC105770939

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 310aa MW: 34732.4 Da PI: 5.4759

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G216900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.5	3.6e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s Gorai.009G216900.2 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58 79*******************************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-37	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.025	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-30	2	78	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.95E-38	2	75	No hit	No description
PRINTS	PR00404	3.6E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-26	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.6E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSGN 60 KSIEEILGRY VNLPEHERGR LRNKEFLIKA LGKLRDEADQ TSQPTSPECI NPQLEEFQQE 120 IISCKSRIAN MEKRLRIFEG DASEITTLIQ AYYHEQILEE TLKQVRLHKQ VLEEKYTSPG 180 PPPTTKGKLP PEAGDVNGFV TTSSSSISNH FLNFLDSNGL LPPGCASIID EAPAVAEILP 240 PQSTDLLNEE EINVEEQLSL ARGLENHNNV QRPEFGQVID VNLSPWTQLY PTGSIWGPNK 300 LVHGWAFEA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_R	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_S	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_A	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_B	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_C	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_D	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_E	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_F	2e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012447769.1	0.0	PREDICTED: MADS-box protein GGM13-like isoform X1
Swissprot	Q9LM46	8e-50	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A0D2URP0	0.0	A0A0D2URP0_GOSRA; Uncharacterized protein
STRING	Gorai.009G216900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	4e-52	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Gorai.009G216900.2
Entrez Gene	105770939

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]