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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G216900.1 | ||||||||
Common Name | B456_009G216900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 311aa MW: 34819.5 Da PI: 5.4759 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.5 | 3.6e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s Gorai.009G216900.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58 79*******************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.025 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-30 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.12E-38 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 3.7E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-26 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSGN 60 KSIEEILGRY VNLPEHERGR LRNKEFLIKA LGKLRDEADQ TSQPTSSPEC INPQLEEFQQ 120 EIISCKSRIA NMEKRLRIFE GDASEITTLI QAYYHEQILE ETLKQVRLHK QVLEEKYTSP 180 GPPPTTKGKL PPEAGDVNGF VTTSSSSISN HFLNFLDSNG LLPPGCASII DEAPAVAEIL 240 PPQSTDLLNE EEINVEEQLS LARGLENHNN VQRPEFGQVI DVNLSPWTQL YPTGSIWGPN 300 KLVHGWAFEA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-17 | 1 | 80 | 1 | 79 | Myocyte-specific enhancer factor 2B |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012447769.1 | 0.0 | PREDICTED: MADS-box protein GGM13-like isoform X1 | ||||
Swissprot | Q9LM46 | 4e-48 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | A0A0D2QKR0 | 0.0 | A0A0D2QKR0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.009G216900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16199 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 3e-50 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G216900.1 |
Publications ? help Back to Top | |||
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