PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gorai.009G196100.1 | ||||||||
Common Name | B456_009G196100, LOC105769031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 1001aa MW: 110946 Da PI: 5.9951 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.2 | 1.8e-24 | 200 | 300 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d + ++W++++iyr++++r++lt+GW++Fv +++L++gD+++F Gorai.009G196100.1 200 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldyTMQPPS-QELVMRDIHDNTWTFRHIYRGQPKRHLLTTGWSSFVGSKRLRAGDSILFI-- 287 99*********************999****99555544.59************************************************.. PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 ++++ +l+v+++ Gorai.009G196100.1 288 RDEKSQLLVGIRH 300 4567778999986 PP | |||||||
2 | Auxin_resp | 112.3 | 4.6e-37 | 326 | 409 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aa+aa+++++F+++YnPr+++seFv++++k+ k+++ ++vs+GmRf m+fete+s +rr++Gt+vgvsdldp+rWp+SkWr+L+ Gorai.009G196100.1 326 AAQAAANRTPFTIFYNPRSCPSEFVIPMAKYCKSVYaTQVSAGMRFGMMFETEESGKRRYMGTIVGVSDLDPLRWPGSKWRNLQ 409 789********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.15E-44 | 188 | 328 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-41 | 193 | 314 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.96E-23 | 199 | 299 | No hit | No description |
PROSITE profile | PS50863 | 13.338 | 200 | 302 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.6E-22 | 200 | 301 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-24 | 200 | 302 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-32 | 326 | 409 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 22.554 | 881 | 965 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.35E-8 | 895 | 960 | No hit | No description |
Pfam | PF02309 | 2.2E-7 | 926 | 967 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1001 aa Download sequence Send to blast |
MGYLFLIIFQ AEVFTSEHVN VESLLCVILV RVDCKASLKG TSLLEDTPVR VMGSFVEEKM 60 KTGVFGNGWA EATLLEEMKL LKEMQHQSGS RKAINSELWH ACAGPLVSLP QVGSLVYYFP 120 QGHSEQVSVS TKRMMTSQVP NYPNLQSQLM CQVHNVTLHA DTETDEVYAQ MSLQPVNSEK 180 DVFNIPDFGV NPNKHPNEIF CKTLTASDTS THGGFSVPRR AAEKLFPQLD YTMQPPSQEL 240 VMRDIHDNTW TFRHIYRGQP KRHLLTTGWS SFVGSKRLRA GDSILFIRDE KSQLLVGIRH 300 ANRHQATLPS SVLSADSMHI GVLAAAAQAA ANRTPFTIFY NPRSCPSEFV IPMAKYCKSV 360 YATQVSAGMR FGMMFETEES GKRRYMGTIV GVSDLDPLRW PGSKWRNLQV EWDEPGCHDK 420 QNRVSPWEVE TPESLFIFPS INSGLKRPYP WILGAESEWG NLINRPLLQF PENGSGNLPY 480 PISNSYSKQL MKMMLKPHLV NHPGTFSSTS QQISAAKGSP LKEMKNVQYT SNQEPQLMQS 540 ENLLIEKPNP SQLALDQPDP INSNLLKINA NGNPHPANEF EGQTQARCNN KKLKSEPEHS 600 TDQLSQLNST LECTEDKLVA NTISPTICNK LSFPNNNQTP SQLQNNPCPI QSQFEPSLLQ 660 AHQMQVSQAD ISSLSSYLPF FNTDEWATIL PSCQSIAGVY GSPGPIPLVG LQDSSAAFPE 720 ATNPTLTTRS EVTWDSQLYN CRSSSQANEL CSFAQQDPCS FNSGSIRDLS DDSNSKSGIY 780 SCFSNNGSTV IDPSVSNVIL EELCSLKDAK FQKPSDSLVG NFSCSQDVQS QITSASLADS 840 RVFSRQDIPD SSGVTSSSNV DFDENGLLQK TSWQQITPRL RTYTKVQKAG SVGRSIDVTS 900 YKNYDKLLSA IECMFGLKGL LKDPRGSGWK LVYVDHENDV LLVGDDPWEQ FVGCVRCIRI 960 LSPTEVQQMS EEGMMLLNRV GSTVQGPISE VCNAPPKNEP * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 54 | 434 | 6 | 392 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In early embryo and during organ development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant with a lower expression in leaves. Detected in embryo axis, provascular tissues, procambium and some differentiated vascular regions of mature organs. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444848.1 | 0.0 | PREDICTED: auxin response factor 5 isoform X2 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A0D2TMS8 | 0.0 | A0A0D2TMS8_GOSRA; Auxin response factor | ||||
STRING | Gorai.009G196100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5808 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Gorai.009G196100.1 |
Entrez Gene | 105769031 |