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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.009G116000.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
LSD |
| Protein Properties |
Length: 185aa MW: 19695 Da PI: 8.3457 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.009G116000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 39.9 | 6.9e-13 | 24 | 48 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+ Cr++L YPrGA++V+CalC+t+
Gorai.009G116000.1 24 CSRCRNILLYPRGATNVCCALCNTI 48
9**********************97 PP
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| 2 | zf-LSD1 | 42.7 | 9.3e-14 | 63 | 87 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y+ GA+sVRC++C+ +
Gorai.009G116000.1 63 CGGCRTLLMYTCGATSVRCSCCNII 87
**********************976 PP
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| 3 | zf-LSD1 | 47 | 4.1e-15 | 101 | 125 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Crt+L+YP+GApsV+Ca+C+ V
Gorai.009G116000.1 101 CGHCRTTLMYPYGAPSVKCAVCHYV 125
**********************987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 185 aa
Download sequence Send
to blast |
MRFMKSSFTS FFTMIADMQS EVVCSRCRNI LLYPRGATNV CCALCNTITQ VPPPGMEMAQ 60
LVCGGCRTLL MYTCGATSVR CSCCNIINHV TASNPMAHIN CGHCRTTLMY PYGAPSVKCA 120
VCHYVTNVGT GNVRCPLPAS RPNATGTMPS TSTSQTVVVE NPMSVDESGK LVSNVVVGIT 180
TDKK*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, roots, rosette leaves, stems, inflorescences and flowers. {ECO:0000269|PubMed:20456049}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Negative regulator of reactive oxygen-induced cell death, cold stress-induced cell death, pathogen-induced hypersensitive response (HR), basal disease resistance. May be involved in the induction of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. Antagonizes the function of BZIP10, a positive regulator of cell death, by interacting in the cytoplasm and preventing its nuclear localization. Controls lysigenous aerenchyma in hypocotyls under root hypoxia. Required for leaf acclimation in response to excess excitation energy. {ECO:0000269|PubMed:10550898, ECO:0000269|PubMed:11595797, ECO:0000269|PubMed:11844114, ECO:0000269|PubMed:12732715, ECO:0000269|PubMed:15347794, ECO:0000269|PubMed:16957775, ECO:0000269|PubMed:18055613, ECO:0000269|PubMed:18790826, ECO:0000269|PubMed:20456049, ECO:0000269|PubMed:21097903}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By methyl viologen. {ECO:0000269|PubMed:20456049}. |
| Publications
? help Back to Top |
- Spedaletti V, et al.
Characterization of a lysine-specific histone demethylase from Arabidopsis thaliana.
Biochemistry, 2008. 47(17): p. 4936-47
[PMID:18393445] - Szechyńska-Hebda M,Czarnocka W,Hebda M,Bernacki MJ,Karpiński S
PAD4, LSD1 and EDS1 regulate drought tolerance, plant biomass production, and cell wall properties.
Plant Cell Rep., 2016. 35(3): p. 527-39
[PMID:26754794] - Czarnocka W, et al.
The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.
Plant Cell Environ., 2017. 40(11): p. 2644-2662
[PMID:28555890] - Bernacki MJ, et al.
LSD1-, EDS1- and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana.
Physiol Plant, 2019. 165(2): p. 369-382
[PMID:30461017]
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