PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G032300.1
Common NameB456_009G032300, LOC105771235
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 449aa    MW: 50944.7 Da    PI: 4.6175
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G032300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.7e-361182092102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk+ye++ed+ ++ ++sws n nsf+v+d+ +f++++LpkyFkh+nf+SF+RQLn+YgF+k+++++         weF++++F++gkk+
  Gorai.009G032300.1 118 FLKKTYEMVEDPVTDPIVSWSINRNSFIVWDSYKFSEDLLPKYFKHKNFSSFIRQLNTYGFRKIDSDR---------WEFANEEFQRGKKH 199
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikr+++
  Gorai.009G032300.1 200 LLKNIKRRSR 209
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-33113207IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-57114207IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.1E-38114207IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-31118207IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18118141IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18156168IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340157181IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18169181IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MVVPDNGGGE GLCLSYSTAF SKKMGDEITQ MESNNILVKE EPIAESSGEE DNQEALLIKA  60
VKEEEEDDDD DDETGVVDDM MNGGDCNNVS NNGSSSSSSS VDLPKPMEGL NESGPPPFLK  120
KTYEMVEDPV TDPIVSWSIN RNSFIVWDSY KFSEDLLPKY FKHKNFSSFI RQLNTYGFRK  180
IDSDRWEFAN EEFQRGKKHL LKNIKRRSRY NRQQQGGVNC ANNSTSNIGL EAEVEILKKD  240
RSILQLEVLK LRQQQEESNH QLSAVHERIR FAECRQQQMC NFIAKIAKYP SFIHRLTKKR  300
KQQNIEIDEG EFSFSKKRKF LETQVTKCLP EAMGMTDLSV KCRNQVNEER LKSIQAAEIS  360
KLSPDYTEKN NNQTLHDEKS SEPAMSSVYD VMSENLLGES SGVENATNEE LSSVNDSKIY  420
LELEDLISWK QCSWGGFTSE LVEQTGCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-27932074129Heat shock factor protein 1
5d5v_B9e-27932074129Heat shock factor protein 1
5d5v_D9e-27932074129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200206LKNIKRR
2298318KRKQQNIEIDEGEFSFSKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674090.0KR067409.1 Gossypium hirsutum HSF28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448100.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A0D2RT870.0A0A0D2RT87_GOSRA; Uncharacterized protein
STRINGGorai.009G032300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-83heat shock transcription factor A2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]