PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G031900.1

Common Name

B456_009G031900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 522aa MW: 58108.4 Da PI: 7.591

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G031900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	3e-10	347	391	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h Er+RR+++N++f+ Lr+llP+ +K + +++L + eY+ sL Gorai.009G031900.1 347 HMLSERKRREKLNESFDALRSLLPPG-----TKKDRVSVLASTREYLTSL 391 6778******************97.....79999********9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.488	342	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-11	344	395	No hit	No description
SuperFamily	SSF47459	9.55E-15	345	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-13	346	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-8	347	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-12	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MDAVFLLDGA ARSGFLQFLM QSTGCTYICL WSYSSSLHQP NCLIGSDGWY NEQNSTQPGA 60 LVLFLEYRRL TFPLENNPGL VPGFAFRNYR PYIELGELEL QSRASHQTQR QFYRTAVFMG 120 CKSGEIELGS PNAVNLNMEM EMRTFFPDDF SRQSLVAVSE PTDPNNPSSS SSSLRSLSTD 180 SPDSYLIFTV PNASRPQVPT GSETTPFLLQ AKPASSSMYD PHQQAMQQAL SEMRSNINLP 240 SLESENAAMT RAILAVLTSP SSSSSSTSQY HSQQSHNLPP SYQPNSKATA FKRYGSPLGA 300 PTTTAARASL RAQSMLKRAI LFYRRFKLVR SEQQPRSCAP TVHQLHHMLS ERKRREKLNE 360 SFDALRSLLP PGTKKDRVSV LASTREYLTS LKSQIVELNR QNQLLEAAQA SATSSDEANG 420 SSNERLNIRI IPVPESTSEQ RIIELRVSVG GEVSIVDILI QLLQFLKLDR NISLMSTEAN 480 TRTAELGSIN HVNLRFRIEG DDWDESTFQE AVRRILADLA Q*

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MDAVFLLDGA ARSGFLQFLM QSTGCTYICL WSYSSSLHQP NCLIGSDGWY NEQNSTQPGA  60
LVLFLEYRRL TFPLENNPGL VPGFAFRNYR PYIELGELEL QSRASHQTQR QFYRTAVFMG  120
CKSGEIELGS PNAVNLNMEM EMRTFFPDDF SRQSLVAVSE PTDPNNPSSS SSSLRSLSTD  180
SPDSYLIFTV PNASRPQVPT GSETTPFLLQ AKPASSSMYD PHQQAMQQAL SEMRSNINLP  240
SLESENAAMT RAILAVLTSP SSSSSSTSQY HSQQSHNLPP SYQPNSKATA FKRYGSPLGA  300
PTTTAARASL RAQSMLKRAI LFYRRFKLVR SEQQPRSCAP TVHQLHHMLS ERKRREKLNE  360
SFDALRSLLP PGTKKDRVSV LASTREYLTS LKSQIVELNR QNQLLEAAQA SATSSDEANG  420
SSNERLNIRI IPVPESTSEQ RIIELRVSVG GEVSIVDILI QLLQFLKLDR NISLMSTEAN  480
TRTAELGSIN HVNLRFRIEG DDWDESTFQE AVRRILADLA Q*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	350	355	ERKRRE
2	351	356	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012440726.1	0.0	PREDICTED: putative transcription factor bHLH041
TrEMBL	A0A0D2UFH1	0.0	A0A0D2UFH1_GOSRA; Uncharacterized protein
STRING	Gorai.009G031900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	3e-71	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.009G031900.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]