PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G271200.1 | ||||||||
Common Name | B456_008G271200, LOC105765476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 39992.1 Da PI: 4.5733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ kl+g Gorai.008G271200.1 129 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 178 89*******.**********82....35*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 128 | 186 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.7E-13 | 129 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-21 | 129 | 186 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.44E-33 | 129 | 185 | No hit | No description |
SMART | SM00380 | 3.2E-38 | 129 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.63 | 129 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 130 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-10 | 152 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEHSILCPIK YTEHKNLTRK FRKPAVKSKK VSSDYDRTYG GEGGDVRRIV RVSVTDPDAT 60 DSSSDEDADF FGRQRVKRYV NEINIEVVAA AATTTSGAVN GNRKRTAAEA ATGCRRPVKL 120 SSTNGSGRKF RGVRQRPWGK WAAEIRDPAR RVRLWLGTYD TAEEAAMVYD NAAIKLRGPD 180 ALTNFVTPPA KENNEKPENL NVSSVSGYES GDESAHNLSS PTSVLNFRTQ SSEETAVEPK 240 KQPHESQEEE SKPLPLKEEE HLVPTESQGE TETNLPDISM YDLPLDFPSV DEFFNTSVSG 300 LSVFDDTDMV LPDSSVFSDG FGDLLVHSPP DFGCSSSSTI CQVDDYFEDI DDLFFSDPLV 360 AL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 127 | 185 | 3 | 62 | ATERF1 |
3gcc_A | 5e-21 | 127 | 185 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440038.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A0D2RN72 | 0.0 | A0A0D2RN72_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G271200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-59 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G271200.1 |
Entrez Gene | 105765476 |
Publications ? help Back to Top | |||
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