PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G250300.1 | ||||||||
Common Name | B456_008G250300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 300aa MW: 33782.8 Da PI: 5.248 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.6e-30 | 131 | 188 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp+v++itY+ eHnh Gorai.008G250300.1 131 SDIWSWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSDPRVFIITYTAEHNH 188 69*************************998**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-30 | 116 | 191 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.729 | 125 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-26 | 126 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.9E-35 | 130 | 190 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-25 | 132 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEHWDCQAVT GETCSNNDAF ISYMENPEFS FGPLSFQHGD EDHLMSFPEV FEPNPNVLDG 60 LMEELYKPFC PELNPYTIPV LEDHVEEPEC QKQQPLVVSG TNKDSTKPKR SRKKQQHRVV 120 KHVTADDGLQ SDIWSWRKYG QKPIKGSPYP RSYYRCSSSK GCLARKQVER SCSDPRVFII 180 TYTAEHNHGH PSRRNSLAGS TRNKSSTVAK PKNLADKNEP HEVAESTVLS PAVIKDESVK 240 QESITMEGGK ILTPDIMLSD ELVESFEGFG DLFVDQFPDL SHELWFMNES ATLTGGLLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-18 | 118 | 191 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669790 | 0.0 | KF669790.1 Gossypium hirsutum WRKY transcription factor 61 (WRKY61) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435751.1 | 0.0 | PREDICTED: WRKY transcription factor 22-like isoform X2 | ||||
TrEMBL | A0A0D2TCD8 | 0.0 | A0A0D2TCD8_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G250300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7810 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 8e-44 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G250300.1 |
Publications ? help Back to Top | |||
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