PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LSD

Protein Properties

Length: 147aa MW: 15073.5 Da PI: 7.9166

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G227400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.3	1.3e-13	29	53	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Gorai.008G227400.1 29 CSGCRNLLLYPVGATSVCCAVCNAV 53 ************************9 PP
2	zf-LSD1	46.8	4.9e-15	68	92	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Gorai.008G227400.1 68 CGGCHTLLMYIRGATSVQCSCCHTV 92 ************************9 PP
3	zf-LSD1	41.8	1.7e-13	106	130	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Gorai.008G227400.1 106 CGNCRMLLMYQYGARSVKCAVCNFV 130 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.10.10	4.5E-4	22	127	No hit	No description
TIGRFAMs	TIGR01053	1.0E-12	26	56	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.4E-10	29	53	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	1.95E-5	29	127	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	8.8E-15	65	94	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-12	68	92	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.0E-12	103	133	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-12	106	130	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MPVPLAPYPT PPAPYTPPAA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC NAVTAVPPPG 60 TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGNCR MLLMYQYGAR 120 SVKCAVCNFV TSVGGSASAA EQKFNS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.2751	0.0	seedling

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012439337.1	1e-101	PREDICTED: protein LOL1 isoform X1
Refseq	XP_012439338.1	1e-101	PREDICTED: protein LOL1 isoform X1
Refseq	XP_016736673.1	1e-101	PREDICTED: protein LOL1
Refseq	XP_016736674.1	1e-101	PREDICTED: protein LOL1
Refseq	XP_017635378.1	1e-101	PREDICTED: protein LOL1
Refseq	XP_017635379.1	1e-101	PREDICTED: protein LOL1
Swissprot	Q93ZB1	5e-81	LOL1_ARATH; Protein LOL1
TrEMBL	A0A0B0PUQ3	2e-99	A0A0B0PUQ3_GOSAR; Protein LOL1-like protein
TrEMBL	A0A0D2TA04	2e-99	A0A0D2TA04_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NFC3	2e-99	A0A1U8NFC3_GOSHI; protein LOL1
TrEMBL	A0A2P5RCK0	2e-99	A0A2P5RCK0_GOSBA; Uncharacterized protein
STRING	Gorai.008G227400.1	1e-100	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7293	26	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	5e-68	lsd one like 1

Link Out ? help Back to Top
Phytozome	Gorai.008G227400.1
Entrez Gene	105765014

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]