PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G133700.2
Common NameB456_008G133700, LOC105763997
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 301aa    MW: 33907.1 Da    PI: 8.0098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G133700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l++ ++++G g+W++I++  g+ R++k+c++rw +yl
  Gorai.008G133700.2 14 KGLWSPEEDEKLLRHITKYGHGCWSSIPKQAGLQRCGKSCRLRWINYL 61
                        678*******************************************97 PP
2Myb_DNA-binding47.93.1e-1567110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +++eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w++
  Gorai.008G133700.2  67 RGTFSQEEENLIIELHAVLGNR-WSQIAARLP-GRTDNEIKNLWNS 110
                         899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-29564IPR009057Homeodomain-like
PROSITE profilePS5129419.409961IPR017930Myb domain
SuperFamilySSF466894.4E-3012108IPR009057Homeodomain-like
SMARTSM007178.2E-141363IPR001005SANT/Myb domain
PfamPF002498.8E-161461IPR001005SANT/Myb domain
CDDcd001674.04E-121761No hitNo description
PROSITE profilePS5129425.99762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2665117IPR009057Homeodomain-like
SMARTSM007177.7E-1466114IPR001005SANT/Myb domain
PfamPF002493.2E-1467111IPR001005SANT/Myb domain
CDDcd001671.18E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRQSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSI PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNRWS QIAARLPGRT DNEIKNLWNS CLKKKLKQKG  120
IDPVTHKPLS EVENGEGNGS NKPSLVGHHP IHQYTSPPPP PPKLSSNWFN PEFSPPMTAS  180
YGPLYYGTTT GGSANNTTWG LVQTQTEEEE EETKWTELLN SPLLMAAALQ NQTPQSYYNI  240
EIKSETCYLT NSSSSSSSSN DMWWPQTQQQ QLPLQHEPLQ NPDICGKDMQ TLTAAAFGHI  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9081201e-131DQ908120.1 Gossypium hirsutum clone LIB5327-042-A1-N1-G3_PS_Gh178 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437875.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A0D2U2F90.0A0A0D2U2F9_GOSRA; Uncharacterized protein
STRINGGorai.008G133700.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.37e-90myb domain protein 55
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]