PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G038800.2
Common NameB456_008G038800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 287aa    MW: 33195.6 Da    PI: 6.543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G038800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.78.5e-48171433128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                         pGfrFhPt+eel+ +yLk+ + g+kl+  +vi  ++iy+++PwdLp   k +e+ewyfF++rd+k+ +g r+nr+t++gyWkatg+d++++
  Gorai.008G038800.2  17 PGFRFHPTEEELLGFYLKNMIYGNKLRY-DVIGFLNIYHHDPWDLPGLSKIGEREWYFFVPRDRKHGNGGRPNRTTENGYWKATGSDRKIV 106
                         9**************************9.99***************8778899*************************************9 PP

                 NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s    ++ +glkktLvfykgrap+g+ktdWvm+eyrl
  Gorai.008G038800.2 107 SLsdPKRITGLKKTLVFYKGRAPRGNKTDWVMNEYRL 143
                         97666777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.49215164IPR003441NAC domain
SuperFamilySSF1019417.19E-5416154IPR003441NAC domain
PfamPF023651.3E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MTCQSNSDDT TLEMELPGFR FHPTEEELLG FYLKNMIYGN KLRYDVIGFL NIYHHDPWDL  60
PGLSKIGERE WYFFVPRDRK HGNGGRPNRT TENGYWKATG SDRKIVSLSD PKRITGLKKT  120
LVFYKGRAPR GNKTDWVMNE YRLPDGCSLP KIYRKATSLR VLEQRAALEE ELEATNTTTS  180
SPLSSLETIS FRSPKEDLVP SISETREFFK KEIEEEKEAM VEEKKDIIAK ENKVSPASLQ  240
FPVGNEKLAE LQLPKIINDW TQDQFWTQLN SPWFQNLTPY ANILNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-4691438140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4515960.0KJ451596.1 Gossypium hirsutum isolate CCRI10-N36 NAC domain protein 78 (NAC78) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436419.10.0PREDICTED: putative NAC domain-containing protein 94
SwissprotQ10S652e-93NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0D2PNG50.0A0A0D2PNG5_GOSRA; Uncharacterized protein
STRINGGorai.008G038800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-100NAC domain containing protein 36
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]