PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G342200.3

Common Name

B456_007G342200, LOC105761438

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1131aa MW: 125695 Da PI: 9.4035

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G342200.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.4e-09	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E e++++a +++G++ Wk++a+ + +R+++++ Gorai.007G342200.3 45 QWSKAEIEQFYKAYREHGKD-WKKVAAAVH-NRSAEMV 80 6***************99.*****.*9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.34E-9	41	88	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-4	42	90	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-5	45	81	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-8	45	80	IPR001005	SANT/Myb domain
CDD	cd00167	4.79E-6	46	80	No hit	No description
SMART	SM01135	2.1E-50	630	731	IPR033471	DIRP domain
Pfam	PF06584	9.1E-31	630	730	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1131 aa Download sequence Send to blast
MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE 60 HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVLGVSDGE 120 RESNKPSDMS EKVQKRKRAK VHLESSKEDV VQPRSIASSE GCLSLLKRAG LNGILPHACR 180 KRTPRVPVSY SYRRDDTESF VPPIKRIKKS EVDDKDDEHV AALTLTGTLQ KGGSPCASRS 240 PYKITERRRS SPVRSYYRML PQSETSKAEL HDSSYECWME GGPGGIELAS GTYARDRGPL 300 MDMDGIGTVE VHRKGKNFYR KKIKVEESKN NLSDDGGEAC SGTEGIVGNA LKGKVDMEIS 360 SAKKKLSSCT ERKRTKKHVL GDQSCALDAL LALANLSSVV PTSITESESS VKLKEDRTTF 420 EVDDQSSVPE AASITHHRDK IKQPRPNKKV LNLLNGAEDD SSRKSTVSEP KQQQEPSNNS 480 RKRKQKPYVS KISSSEAPMD SRLRKHFDNE EMAKEEKKYL TKSKCASQQT SFRVPEGSVT 540 NNDPKMAGID SVVSTSQVPA SDPVSLPTKH QSRRKMNLKR ALLSTHKNSS VCTLKNQPNN 600 HSVPPDTPKE MLSSCLSSNL ARRWCCFEWF YSAIDYAWFA KREFVEYLNH VSLDHIPRLT 660 RVEWGVIRSS LGKPRRLSEH FLLEEREKLK QYRESVRQHY TQLRVGTREG LATDLAPPLC 720 VGQRVIAIHP KTREVHDGKV LTVDHDRCRV QFDSPDLGVE FVMDIDCMPL NPLENMPETL 780 KKQNLAFNQF SLAPRGSQGN RHLELGGPEV FTSCGCVENA TSPVNINPIK VDAKRTLLHG 840 KPALPHVVSA HQAAYDQPLR IAHIQGREAD IRAMSELSHA LDKKEALLSE LRNTNDIIEN 900 QNGESCLKAS SALLNLRQRN TYPANPLLPW QKHPTNLDFL GGLTSCSFDS SLISPEAGCV 960 VGDIINGSTL KARAMVDAAI KALSSMKEGE DVFKRIGEAL NIVDKKQITS DISMPAIKSP 1020 EQNQVNGSLS ITSKPMATTG WAPNPKLQEA SNKNEEQVPL ELITSCVSTL LMIQRCTERQ 1080 FPPADVAQII DSAITSLHPC CPQNLPIYRE IQMCMGKIKT QILALIPTLI *

Sequence ? help Back to Top

Protein Sequence Length: 1131 aa Download sequence Send to blast

MAPTRKSKSV NKQYSSVYEV SPDKNAGNSR KSKAKKKLTD KLGTQWSKAE IEQFYKAYRE  60
HGKDWKKVAA AVHNRSAEMV EALYSMNRAY LSLPDGTASV IGLIAMMTDH YNVLGVSDGE  120
RESNKPSDMS EKVQKRKRAK VHLESSKEDV VQPRSIASSE GCLSLLKRAG LNGILPHACR  180
KRTPRVPVSY SYRRDDTESF VPPIKRIKKS EVDDKDDEHV AALTLTGTLQ KGGSPCASRS  240
PYKITERRRS SPVRSYYRML PQSETSKAEL HDSSYECWME GGPGGIELAS GTYARDRGPL  300
MDMDGIGTVE VHRKGKNFYR KKIKVEESKN NLSDDGGEAC SGTEGIVGNA LKGKVDMEIS  360
SAKKKLSSCT ERKRTKKHVL GDQSCALDAL LALANLSSVV PTSITESESS VKLKEDRTTF  420
EVDDQSSVPE AASITHHRDK IKQPRPNKKV LNLLNGAEDD SSRKSTVSEP KQQQEPSNNS  480
RKRKQKPYVS KISSSEAPMD SRLRKHFDNE EMAKEEKKYL TKSKCASQQT SFRVPEGSVT  540
NNDPKMAGID SVVSTSQVPA SDPVSLPTKH QSRRKMNLKR ALLSTHKNSS VCTLKNQPNN  600
HSVPPDTPKE MLSSCLSSNL ARRWCCFEWF YSAIDYAWFA KREFVEYLNH VSLDHIPRLT  660
RVEWGVIRSS LGKPRRLSEH FLLEEREKLK QYRESVRQHY TQLRVGTREG LATDLAPPLC  720
VGQRVIAIHP KTREVHDGKV LTVDHDRCRV QFDSPDLGVE FVMDIDCMPL NPLENMPETL  780
KKQNLAFNQF SLAPRGSQGN RHLELGGPEV FTSCGCVENA TSPVNINPIK VDAKRTLLHG  840
KPALPHVVSA HQAAYDQPLR IAHIQGREAD IRAMSELSHA LDKKEALLSE LRNTNDIIEN  900
QNGESCLKAS SALLNLRQRN TYPANPLLPW QKHPTNLDFL GGLTSCSFDS SLISPEAGCV  960
VGDIINGSTL KARAMVDAAI KALSSMKEGE DVFKRIGEAL NIVDKKQITS DISMPAIKSP  1020
EQNQVNGSLS ITSKPMATTG WAPNPKLQEA SNKNEEQVPL ELITSCVSTL LMIQRCTERQ  1080
FPPADVAQII DSAITSLHPC CPQNLPIYRE IQMCMGKIKT QILALIPTLI *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	479	484	SRKRKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ908228	9e-65	DQ908228.1 Gossypium hirsutum clone LIB5327-014-A1-N1-B10_Gh288 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434696.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X4
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A0D2PIX7	0.0	A0A0D2PIX7_GOSRA; Uncharacterized protein
STRING	Gorai.007G342200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Gorai.007G342200.3
Entrez Gene	105761438

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]