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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.007G177300.1 |
| Common Name | B456_007G177300, LOC105803533 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
C2H2 |
| Protein Properties |
Length: 321aa MW: 35314.6 Da PI: 7.512 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.007G177300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13 | 0.00031 | 161 | 180 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r nL+ H+
Gorai.007G177300.1 161 FSCPVCCKTFNRYNNLQMHM 180
89*****************9 PP
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| 2 | zf-C2H2 | 11.9 | 0.00071 | 245 | 267 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +C k F k + ++H +++
Gorai.007G177300.1 245 FNCRKCEKAFAVKGDWRTHEKNC 267
78*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MTDPYSNLFS GCFNFMPLHP HYATAPTPLN HPNPCSHLHP NSILNSETSG HPLAPSPPGE 60
EALPLINYLS PTRQQENNEP TSSSMEDDKL STVDDEAASV ALHIGLPSHS SDYGFSPSVD 120
LTDNCGVNGN VAASGYPLSC SSKGQYWIPT PTQILVGPTQ FSCPVCCKTF NRYNNLQMHM 180
WGHGSQYRKG PDSLRGSQPT GMLRLPCYCC APGCKHNIDH PRARALKDFR TLQTHYKRKH 240
GIKPFNCRKC EKAFAVKGDW RTHEKNCGKI WYCICGSDFK HKRSLKDHIK AFGAGHGSVG 300
IASFDEDDEP VSEFESSTTT *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
