PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G177300.1
Common NameB456_007G177300, LOC105803533
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 321aa    MW: 35314.6 Da    PI: 7.512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G177300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031161180120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  nL+ H+
  Gorai.007G177300.1 161 FSCPVCCKTFNRYNNLQMHM 180
                         89*****************9 PP
2zf-C2H211.90.00071245267123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C +C k F  k + ++H +++
  Gorai.007G177300.1 245 FNCRKCEKAFAVKGDWRTHEKNC 267
                         78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.7E-6137183No hitNo description
SMARTSM003550.28161183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159161188IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5161180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
SuperFamilySSF576675.39E-6230265No hitNo description
Gene3DG3DSA:3.30.160.604.3E-5232265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035586245265IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTDPYSNLFS GCFNFMPLHP HYATAPTPLN HPNPCSHLHP NSILNSETSG HPLAPSPPGE  60
EALPLINYLS PTRQQENNEP TSSSMEDDKL STVDDEAASV ALHIGLPSHS SDYGFSPSVD  120
LTDNCGVNGN VAASGYPLSC SSKGQYWIPT PTQILVGPTQ FSCPVCCKTF NRYNNLQMHM  180
WGHGSQYRKG PDSLRGSQPT GMLRLPCYCC APGCKHNIDH PRARALKDFR TLQTHYKRKH  240
GIKPFNCRKC EKAFAVKGDW RTHEKNCGKI WYCICGSDFK HKRSLKDHIK AFGAGHGSVG  300
IASFDEDDEP VSEFESSTTT *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012491218.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0D2SFC20.0A0A0D2SFC2_GOSRA; Uncharacterized protein
STRINGGorai.007G177300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]