PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G114400.4

Common Name

B456_007G114400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 340aa MW: 38835.6 Da PI: 7.0867

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G114400.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.1	1.5e-35	5	145	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +GfrFhPtd e + e L +k++ ++ ++ + vi+++ di+k+eP +Lp +++ ++++ wyfF++ + ky+++krknr+tk+gyW Gorai.007G114400.4 5 KGFRFHPTDAEAI-ELLWEKLQLDRDSFVQlgdslvpVITQLnDICKFEPAELPgrSELVSGDNVWYFFCSPRYKYRNSKRKNRVTKQGYW 94 7**********.89999999888444334556665899998*******5336677999*********************** PP NAM 84 katgkdkevlsk..kgelvglkktLvfykg....rapkgektdWvmheyrl 128 + tgk+++++++ +++ +g+++ Lvfykg +++k++kt Wvmhe++l Gorai.007G114400.4 95 NPTGKSRTIVTTcdGKKITGTRQALVFYKGrvcvKNKKANKTLWVMHEFEL 145 ******99878888******753333789999*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	39.348	3	163	IPR003441	NAC domain
SuperFamily	SSF101941	1.1E-35	3	163	IPR003441	NAC domain
Pfam	PF02365	3.9E-18	5	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MNYVKGFRFH PTDAEAIELL WEKLQLDRDS FVQLGDSLVP VITQLNDICK FEPAELPGRS 60 ELVSGDNVWY FFCSPRYKYR NSKRKNRVTK QGYWNPTGKS RTIVTTCDGK KITGTRQALV 120 FYKGRVCVKN KKANKTLWVM HEFELTLNLP NQKSLILCKL KKKYGKINVS IGEEEQSNQY 180 LPSSNLENHC TNNGVPKEQL NSTEPVAFSE YSGIQSELVN NEQTVDEFVD SLLIKNDEFY 240 SNQPYFVHDK QDPKNQEGFS DLTYQKLRTP NDRVWTMNEV GSSSGLVAND PSYSNGDNNQ 300 HDTSFAEQGS SLAFENHVLV DSISMVSVES KFSIKIMWR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-19	1	145	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012490208.1	0.0	PREDICTED: NAC domain-containing protein 4-like isoform X3
TrEMBL	A0A0D2SBL7	0.0	A0A0D2SBL7_GOSRA; Uncharacterized protein
STRING	Gorai.007G114400.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	8e-26	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Gorai.007G114400.4

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]