PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G260300.1
Common NameB456_006G260300, LOC105800723
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 264aa    MW: 30051.8 Da    PI: 8.9511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G260300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-2195143355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  Gorai.006G260300.1  95 YRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 143
                         9*******.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-2394152IPR016177DNA-binding domain
SMARTSM003801.0E-3794157IPR001471AP2/ERF domain
PROSITE profilePS5103224.05294151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3295152IPR001471AP2/ERF domain
PfamPF008471.9E-1495143IPR001471AP2/ERF domain
CDDcd000186.56E-3495153No hitNo description
PRINTSPR003671.3E-1195106IPR001471AP2/ERF domain
PRINTSPR003671.3E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MCGGAIISDF VAPKYDRQLT GDDLWSELDI FSDLLGFDNN GKSFVNHQFH NNNNNKKLIN  60
PKDNQLNKER SETIQKTSQV TKKVEKTQRT RKNFYRGIRQ RPWGKWAAEI RDPQKGVRVW  120
LGTYNTAEEA ARAYDEAAKR IRGDKAKLNF PQTPTKNQAA SPALTLLPPA KKRCIVPELT  180
QPSFQTDSPP YPMGLGYGRS EDYKPIEVVE SELELKEQIW SLESFLGLET NHETMTQLSG  240
NGGTDSLELW TLDDLVTQYK QRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2395151360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.3026e-65seedling
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7811190.0AY781119.1 Gossypium hirsutum ethylene-responsive element binding protein ERF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487470.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A0D2S2K70.0A0A0D2S2K7_GOSRA; Uncharacterized protein
STRINGGorai.006G260300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.17e-49ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]