PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MIKC_MADS

Protein Properties

Length: 328aa MW: 37688.1 Da PI: 5.2311

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G093000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.2	1.9e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g++ +s Gorai.005G093000.1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRISHFS 58 79*******************************************99987 PP
2	K-box	18.8	6.7e-08	109	171	16	78
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 + qqe+ +L++++++ + ++R + + s+ eL++ e++L + l ++ ++K+ +l ++++ Gorai.005G093000.1 109 EIQQEIVRLQQQLQMAEDQLRAYEPDPFRFTSMAELESCEKHLVETLANVVQRKEYILSNHLS 171 68********************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.688	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-37	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-29	2	85	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.57E-35	2	75	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRISHFSGR 60 RRIEDVFMRY INLPDREREH DIQNKEYMLR ILQQLRSEND VALQLAKFEI QQEIVRLQQQ 120 LQMAEDQLRA YEPDPFRFTS MAELESCEKH LVETLANVVQ RKEYILSNHL SSYDPSPIQQ 180 GLPPSFENEV VNWLPDNGQN QSQIFDASAS LNPLRDFSST VYDPLLQGSM SNVDPHNIGD 240 QCHVSNPNTE NFAPWPRSFA STGLQSNSMP PTLYSHVQHG MVSHQEMAEM VPNDQQMEIP 300 GNYNSHGQMA DNEGSNYENR VHEHDGQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	3e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_B	3e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_C	3e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
3mu6_D	3e-16	2	70	1	68	Myocyte-specific enhancer factor 2A
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616529	4e-61	JX616529.1 Gossypium hirsutum clone NBRI_GE61266 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481191.1	0.0	PREDICTED: MADS-box transcription factor ANR1-like
Swissprot	Q9LM46	1e-113	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A0D2RI52	0.0	A0A0D2RI52_GOSRA; Uncharacterized protein
STRING	Gorai.005G093000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2179	23	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-106	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Gorai.005G093000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]