PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G142800.1
Common NameB456_004G142800, LOC105791446
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 294aa    MW: 33187.9 Da    PI: 5.3172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G142800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-1976124355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Gorai.004G142800.1  76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124
                         9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-2275133IPR016177DNA-binding domain
SMARTSM003803.7E-3875138IPR001471AP2/ERF domain
PROSITE profilePS5103223.77575132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3275133IPR001471AP2/ERF domain
PfamPF008475.8E-1276124IPR001471AP2/ERF domain
PRINTSPR003677.4E-127687IPR001471AP2/ERF domain
CDDcd000181.82E-3376133No hitNo description
PRINTSPR003677.4E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MCGGAIISEF IPRKGGRRVT AADIWPNSPF VKINGFCSYR DHSVCHFKRS QPEPPSSLAG  60
DEQVEKKPKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR  120
KIRGKKAKVN FPNEDDSFST PYNLNRSMPN SNPCVYQQHI NSNYGFNYDL NEIGGYATDP  180
IVISGDENKG SDDQNVNLCY VPVKAEELEE EEKRREPMNK AVSAVGVQEE NNEVQKLSEE  240
LMAYENYMKF YQIPYLDGES PTQNGVAPQD SVVGELWSFD DDGVAAPETS TAM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2276132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-21761341574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671KPKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012474966.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like isoform X1
TrEMBLA0A0D2PBT40.0A0A0D2PBT4_GOSRA; Uncharacterized protein
STRINGGorai.004G142800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-36ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]