PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.004G037000.1

Common Name

B456_004G037000, LOC105790290

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 342aa MW: 37808.2 Da PI: 7.1539

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.004G037000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00094	183	202	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ Gorai.004G037000.1 183 FSCPLCCKTFNRYNNLQMHM 202 89*****************9 PP
2	zf-C2H2	13.3	0.00026	267	289	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k F k + ++H +++ Gorai.004G037000.1 267 FVCRKCEKAFAVKGDWRTHEKNC 289 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.27E-5	177	205	No hit	No description
SMART	SM00355	0.47	183	205	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.18	183	210	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.0E-5	183	202	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	185	205	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.81E-6	249	287	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.0E-5	253	287	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	65	267	287	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MTDPWFNFMP PSSNYTSSSS SSTVPTQNHP NPSSQPRTIF NKSQIPHHHP LKEALPFINY 60 LSLTSQQQQE SIKEPSSSSM EEEDKSIISL FPTIVDDGDD GYDYDEDDDD DGGVTVELHI 120 GLPNPSSDLK SRASSPSKDM TADKLQRNPV SAGAASGNST TPLSKGQYWI PTPSQILVGP 180 TQFSCPLCCK TFNRYNNLQM HMWGHGSQYR KGPDSLKGAQ PTAMLRLPCY CCSPGCKHNI 240 DNPRAKPLKD FKTLQTHYKR KHGIKPFVCR KCEKAFAVKG DWRTHEKNCG KVWYCICGSD 300 FKHKRSLKDH TKAFGPTGHG AVGGVDSLDE DDEPGSEIEP I*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MTDPWFNFMP PSSNYTSSSS SSTVPTQNHP NPSSQPRTIF NKSQIPHHHP LKEALPFINY  60
LSLTSQQQQE SIKEPSSSSM EEEDKSIISL FPTIVDDGDD GYDYDEDDDD DGGVTVELHI  120
GLPNPSSDLK SRASSPSKDM TADKLQRNPV SAGAASGNST TPLSKGQYWI PTPSQILVGP  180
TQFSCPLCCK TFNRYNNLQM HMWGHGSQYR KGPDSLKGAQ PTAMLRLPCY CCSPGCKHNI  240
DNPRAKPLKD FKTLQTHYKR KHGIKPFVCR KCEKAFAVKG DWRTHEKNCG KVWYCICGSD  300
FKHKRSLKDH TKAFGPTGHG AVGGVDSLDE DDEPGSEIEP I*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX618472	1e-109	JX618472.1 Gossypium hirsutum clone NBRI_GE63960 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012473259.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-117	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D2RSW6	0.0	A0A0D2RSW6_GOSRA; Uncharacterized protein
STRING	Gorai.004G037000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24405	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-119	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.004G037000.1
Entrez Gene	105790290

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]