PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MIKC_MADS

Protein Properties

Length: 142aa MW: 16332.7 Da PI: 9.4348

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G090800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.8	1.4e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRrng+lKKA EL++LCdaev viifs+tgkly +ss Gorai.003G090800.1 9 KKIENLTSRQVTFSKRRNGLLKKARELCILCDAEVGVIIFSTTGKLYQWSS 59 68***********************************************96 PP
2	K-box	38.5	4.9e-14	80	142	7	69
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 ++ ++a+++s + +++ Lk+e+ +L+ +l G++Le Ls+ke qqLe+qL++++ +++++K Gorai.003G090800.1 80 SDDQKAEQNSQSFDVSALKEEYLKLRAAYMRLNGKELEGLSFKEVQQLEHQLNEGILSVKEHK 142 34566677777889**********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.455	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	5.48E-42	2	73	No hit	No description
SuperFamily	SSF55455	2.09E-32	2	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-28	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.0E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-28	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-28	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.6E-8	84	142	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	8.446	87	142	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MGRGKIEIKK IENLTSRQVT FSKRRNGLLK KARELCILCD AEVGVIIFST TGKLYQWSST 60 SMEDTLLRYN RGKVVEQHPS DDQKAEQNSQ SFDVSALKEE YLKLRAAYMR LNGKELEGLS 120 FKEVQQLEHQ LNEGILSVKE HK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	5e-22	1	69	1	69	MEF2C
5f28_B	5e-22	1	69	1	69	MEF2C
5f28_C	5e-22	1	69	1	69	MEF2C
5f28_D	5e-22	1	69	1	69	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012470659.1	1e-100	PREDICTED: agamous-like MADS-box protein AGL18
Swissprot	Q39295	5e-45	AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBL	A0A0D2MLE1	1e-99	A0A0D2MLE1_GOSRA; Uncharacterized protein (Fragment)
TrEMBL	A0A2P5SC90	1e-98	A0A2P5SC90_GOSBA; Uncharacterized protein
STRING	Gorai.003G090800.1	1e-100	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6061	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	8e-46	AGAMOUS-like 15

Link Out ? help Back to Top
Phytozome	Gorai.003G090800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]