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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.003G003900.3 | ||||||||
Common Name | B456_003G003900, LOC105787414 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 26260.7 Da PI: 7.5853 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146 | 1.9e-45 | 11 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdke 91 pGfrFhPt+eelv++yLk+ v gk+l + ++i ++iy++ PwdLp ++k +e+ewyfF++rd+++ + gk++nr+t++gyWkatg+d++ Gorai.003G003900.3 11 LPGFRFHPTEEELVNYYLKETVLGKNLYC-DIIGFLNIYNHYPWDLPGMAKIGEREWYFFVQRDTRSGHgGKKPNRTTERGYWKATGSDRQ 100 69************************999.99***************888999***********9999758899***************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +gl+ktLvfy+g+ap+g++tdWvm+eyrl Gorai.003G003900.3 101 IRRLtePKIIMGLRKTLVFYTGKAPNGNRTDWVMNEYRL 139 *9874455569**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-52 | 10 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.473 | 10 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-26 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MENIISPEII LPGFRFHPTE EELVNYYLKE TVLGKNLYCD IIGFLNIYNH YPWDLPGMAK 60 IGEREWYFFV QRDTRSGHGG KKPNRTTERG YWKATGSDRQ IRRLTEPKII MGLRKTLVFY 120 TGKAPNGNRT DWVMNEYRLS DTSILREDIV LCKIYRKATS LRVFEQRAEE QALSSYVAQN 180 NNITVPLPLQ HHDYGTNMAQ ADSDEHGPSS YSAWTTMTEC FTQYGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-41 | 12 | 157 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847252 | 0.0 | KC847252.1 Gossypium hirsutum NAC domain protein NAC75 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314340.1 | 1e-172 | protein CUP-SHAPED COTYLEDON 1-like | ||||
Refseq | XP_012469248.1 | 1e-172 | PREDICTED: protein CUP-SHAPED COTYLEDON 1-like isoform X2 | ||||
Swissprot | Q10S65 | 3e-77 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0D2QDQ3 | 1e-170 | A0A0D2QDQ3_GOSRA; Uncharacterized protein | ||||
TrEMBL | W6J905 | 1e-170 | W6J905_GOSHI; NAC domain protein NAC75 | ||||
STRING | Gorai.003G003900.1 | 1e-169 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-82 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.003G003900.3 |
Entrez Gene | 105787414 |
Publications ? help Back to Top | |||
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