PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.003G003900.2

Common Name

B456_003G003900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 163aa MW: 18944.7 Da PI: 9.282

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.003G003900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.5	7e-46	11	139	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratksgyWkatgkdke 91 pGfrFhPt+eelv++yLk+ v gk+l + ++i ++iy++ PwdLp ++k +e+ewyfF++rd+++ + gk++nr+t++gyWkatg+d++ Gorai.003G003900.2 11 LPGFRFHPTEEELVNYYLKETVLGKNLYC-DIIGFLNIYNHYPWDLPGMAKIGEREWYFFVQRDTRSGHgGKKPNRTTERGYWKATGSDRQ 100 69**********************999.99***********888999*******9999758899*************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +gl+ktLvfy+g+ap+g++tdWvm+eyrl Gorai.003G003900.2 101 IRRLtePKIIMGLRKTLVFYTGKAPNGNRTDWVMNEYRL 139 9874455569*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.72E-49	10	144	IPR003441	NAC domain
PROSITE profile	PS51005	47.864	10	156	IPR003441	NAC domain
Pfam	PF02365	2.3E-26	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MENIISPEII LPGFRFHPTE EELVNYYLKE TVLGKNLYCD IIGFLNIYNH YPWDLPGMAK 60 IGEREWYFFV QRDTRSGHGG KKPNRTTERG YWKATGSDRQ IRRLTEPKII MGLRKTLVFY 120 TGKAPNGNRT DWVMNEYRLS DTSILRVQTI CSSTELTNLL MS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-39	10	161	15	162	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847252	0.0	KC847252.1 Gossypium hirsutum NAC domain protein NAC75 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469247.1	1e-107	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like isoform X1
Swissprot	Q10S65	3e-67	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0D2NUE1	1e-117	A0A0D2NUE1_GOSRA; Uncharacterized protein
STRING	Gorai.003G003900.1	1e-106	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	6e-67	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Gorai.003G003900.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]