PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.002G245800.1

Common Name

B456_002G245800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 290aa MW: 31478.1 Da PI: 7.3151

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.002G245800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	188	210	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Gorai.002G245800.1 188 HECSICGAEFSSGQALGGHMRRH 210 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	6.8E-10	120	145	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.28E-6	120	143	No hit	No description
SMART	SM00355	0.45	121	143	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.767	121	148	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	123	143	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.28E-6	183	210	No hit	No description
Pfam	PF13912	7.4E-13	187	211	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	188	210	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.743	188	210	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	190	210	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEGQDDDVVC CKDDDHQLQI IKGKRTKRPR APPSSPPLTS VVASTTTTTT SSGGGGGAVG 60 VSPTITSSFD LAESSTEEEE REQDMANCLL VLSQGQTRKV KPPSPPPSEP STEAAVETDV 120 HQCKTCNRCF PSFQALGGHR ASHKKFKVVN DQDINNNRNK EDHRHYDQFN EKATTLSLHI 180 TSKKSRVHEC SICGAEFSSG QALGGHMRRH RTLTNAPTMT TPATATTTLD TVVRTSEQRK 240 KPRTVLQLDL NLPAPEDDLH KEPNNKVLSF ASEGKLLGFS ASSLVDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616567	0.0	JX616567.1 Gossypium hirsutum clone NBRI_GE61324 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468255.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A0D2QBI9	0.0	A0A0D2QBI9_GOSRA; Uncharacterized protein
STRING	Gorai.002G245800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24279	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	9e-37	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.002G245800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]