PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.001G012400.1

Common Name

B456_001G012400, LOC105792572

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 518aa MW: 57642.5 Da PI: 8.5559

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.001G012400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.2e-12	340	384	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f Lr+llP+ +K +Ka++L+ A eY+ sL Gorai.001G012400.1 340 HMMSERKRREKLNESFVALRSLLPSG-----TKRDKASVLTTAREYLVSL 384 8899*******************8.....8************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.54E-12	333	388	No hit	No description
SuperFamily	SSF47459	1.57E-16	334	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.11	335	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-13	339	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	340	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-12	341	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence Send to blast
MDAVFNLDEA SRAEFLHLLM QSTGCSYICL WSYSFLQQAN CLIGLDGFCN EENSQALGLF 60 LEYKQLILRL ENDNGLVPGF AFKNNQPYIE LRELELQNRA FHETQRQFYR VAGIKVCFQA 120 NTAAFMACRS GEIELGSSSV VQLNMEMEMR SFFSEDQLPQ STDQNRPSSS SSSLRSLSTS 180 SPDSSLIFTV PTTHEPAPSS LQQATITPSS INDPRRAMQA FSQTGSSIPL PTLESENAAM 240 TRAILAVLTS PSSSSSSSST PFYRNQSLPY NNYRLNPKAS AFKGYATGLG AGPATTPARA 300 SLRAQAMMKR AILFYRKFNL ARREQLLRSR PGPTSNQLHH MMSERKRREK LNESFVALRS 360 LLPSGTKRDK ASVLTTAREY LVSLKAQIME LNRQKQLLEA PILPPKEGAA AIEVNDPSNE 420 RVNVRVIPVP ESTSEERLAD LRVTVRGERP IVDILIHLLE FLKLDRNVSL MSIEANTGVS 480 EFGSVNLVSL RLRIQGDGWD ESTFQEAVRR LITHLAQ*

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence Send to blast

MDAVFNLDEA SRAEFLHLLM QSTGCSYICL WSYSFLQQAN CLIGLDGFCN EENSQALGLF  60
LEYKQLILRL ENDNGLVPGF AFKNNQPYIE LRELELQNRA FHETQRQFYR VAGIKVCFQA  120
NTAAFMACRS GEIELGSSSV VQLNMEMEMR SFFSEDQLPQ STDQNRPSSS SSSLRSLSTS  180
SPDSSLIFTV PTTHEPAPSS LQQATITPSS INDPRRAMQA FSQTGSSIPL PTLESENAAM  240
TRAILAVLTS PSSSSSSSST PFYRNQSLPY NNYRLNPKAS AFKGYATGLG AGPATTPARA  300
SLRAQAMMKR AILFYRKFNL ARREQLLRSR PGPTSNQLHH MMSERKRREK LNESFVALRS  360
LLPSGTKRDK ASVLTTAREY LVSLKAQIME LNRQKQLLEA PILPPKEGAA AIEVNDPSNE  420
RVNVRVIPVP ESTSEERLAD LRVTVRGERP IVDILIHLLE FLKLDRNVSL MSIEANTGVS  480
EFGSVNLVSL RLRIQGDGWD ESTFQEAVRR LITHLAQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	343	348	ERKRRE
2	344	349	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012476697.1	0.0	PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBL	A0A0D2QJ47	0.0	A0A0D2QJ47_GOSRA; Uncharacterized protein
STRING	Gorai.001G012400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-58	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.001G012400.1
Entrez Gene	105792572

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]