PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.U037700.3.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 500aa    MW: 55890.6 Da    PI: 7.3033
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.U037700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-16319378155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Glyma.U037700.3.p 319 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 378
                        78*******************988886678446*************************98 PP
2AP245.71.6e-14423472355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.U037700.3.p 423 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 472
                        9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.14E-22319386No hitNo description
PfamPF008476.2E-13319378IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-17319388IPR016177DNA-binding domain
SMARTSM003801.8E-28320392IPR001471AP2/ERF domain
PROSITE profilePS5103219.203320386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-16320387IPR001471AP2/ERF domain
PRINTSPR003671.9E-6321332IPR001471AP2/ERF domain
CDDcd000181.61E-25421482No hitNo description
SuperFamilySSF541716.21E-18421482IPR016177DNA-binding domain
SMARTSM003804.9E-34422486IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-18422480IPR001471AP2/ERF domain
PROSITE profilePS5103219.282422480IPR001471AP2/ERF domain
PfamPF008477.4E-10423472IPR001471AP2/ERF domain
PRINTSPR003671.9E-6462482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MKSMNDSNTV DDGNNHNNWL GFSLSPHMKM DVVTSSTTTG PHHPHQHHHH HHYYHHPHEA  60
SAAACNNNNN TVPTNFYMSP SHLNTSGICY GVGENSAFHT PLAMMPLKSD GSLCIMEALT  120
RSQTQMMVPT SSPKLEDFLG GATMGAQDYG THEREAMALS LDSIYYSNQN AEPETNRDHS  180
SSLDLLSDHF RHQTHHHPYY SGLGIYQVEE EETKEQPHVA VCSSQMPQVV EGSIACFKNW  240
VPTREYSSSS TQQNLEQHQV NSSSSGGLGE DNNVAYGNVG VGSSVGCVAV DAKKRGSSKL  300
GQKQPVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQTRK GRQVYLGGYD  360
MEEKAARAYD LAALKYWGPS THINFPLENY QTQLEEMKNM SRQEYVAHLR RKSSGFSRGA  420
SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDVAAIKF RGVNAVTNFD  480
ISRYDVERIM ASNTLLAES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.U037700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983430.10.0LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A367GL370.0A0A367GL37_SOYBN; Uncharacterized protein
STRINGGLYMA0041S50.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-131AP2 family protein