PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G234500.6.p

Common Name

GLYMA_20G234500, LOC100789533

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 1140aa MW: 128422 Da PI: 9.288

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G234500.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.9e-10	60	96	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Glyma.20G234500.6.p 60 QWSKEELERFYEAYRKYGKD-WKKVAAFIR-NRSTEMVE 96 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-11	55	104	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.848	56	109	IPR017884	SANT domain
SMART	SM00717	1.1E-5	57	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-6	60	99	IPR009057	Homeodomain-like
Pfam	PF00249	3.1E-9	60	100	IPR001005	SANT/Myb domain
CDD	cd00167	7.98E-7	61	95	No hit	No description
Pfam	PF06584	1.4E-32	640	740	IPR033471	DIRP domain
SMART	SM01135	3.6E-56	640	741	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1140 aa Download sequence Send to blast
MFQLCFLVQR HKSSMAPTRK SRSVNKRMSS SNDNSPEKDG INSNKNKLRK KKLTDKLGSQ 60 WSKEELERFY EAYRKYGKDW KKVAAFIRNR STEMVEALYN MNRAYLSLPE GTASVVGLIA 120 MMTDHYNVME GSDSERESND APGSQKPVKR KHEEVQLSVS KDQSHSIASR DDCLSILKKR 180 RFDGMQLKPY AVGKRTPRVP VYKKDDTENY VSPYRRSLKS TIDANDDEVA HVVALALTEA 240 AHRGGSPQVS QTPSRRVEQK SSPIQSLERK HQMSETACAK FHDVSVDEEV LESSIESRGA 300 ENGEYARDNS SLMDTEGIST VKVFQKRKIF YRKRERVENV GNHQLDDGGE ACSGTEEGLS 360 FSSLKEKVDI DVTNEKLEKF SPKSQRKRNK KLFFGDETPA LNALQTLADL SLMMPISTME 420 SESSIQFKGE RMVADKNNKS ALLEATSTNH KRHQLKHSAV PEIEVSTSKK SKIGKESTKD 480 TNVLSESKGK LPFADTTWKK KRKSMGSKVA NAKLDSYPSG PLKDEALDDD NKPVVKGKHT 540 DQAFTLPKQL KTVKSSESSF CSDQKDLTVS TAEVPLLNEV SLPTKRSRRK MILQRTSLPK 600 EKSSDYILKS QPNKYSTLKA KVSSCLASNM VRRWFIFEWF YSAIDYPWFA KREFMEYLNH 660 VGLGNIPRLT RVEWSVIKSS LGKPRRFSEH FLCEERHKLE QYRESVRKHY TELRTGIRDG 720 LPTDLAKPLY VGQRVIALHP KTREIHDGSV LTVDYDKCRI QFDRPELGVE FVMDIDCMPL 780 NPSDNMPEAL RRHIGSQKAS FMNKEPQING NSNFGGCEMH SFPVKAKVAT VDNLCAQAGC 840 AQPCKVTHHQ AKEADIHAVS ELKRALDKKE TLLMELRSAN SDILENQNGI ECLKDSEVFK 900 KHYATVLVEL KEASGQVSDA MLQLRQRNTY RGNSLPPWMK PQASFNVHDD LPGMLDSSLT 960 QELGSTVVQV IKGSRLRAHA MVDAAFEALS LTKEGEDAFI KIGQALDSIN HQQLASKSRL 1020 PVIRSQEQVN VNGSFYHLSH STSGVSEPIL NDPSVPKPHN YSDKFDTELP SDLIASCVAT 1080 LIMIQTCTER QYPPADVAQI LDSAVTSLHP CCPQNLPIYR EIQMCMGRIK TQMLALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1140 aa Download sequence Send to blast

MFQLCFLVQR HKSSMAPTRK SRSVNKRMSS SNDNSPEKDG INSNKNKLRK KKLTDKLGSQ  60
WSKEELERFY EAYRKYGKDW KKVAAFIRNR STEMVEALYN MNRAYLSLPE GTASVVGLIA  120
MMTDHYNVME GSDSERESND APGSQKPVKR KHEEVQLSVS KDQSHSIASR DDCLSILKKR  180
RFDGMQLKPY AVGKRTPRVP VYKKDDTENY VSPYRRSLKS TIDANDDEVA HVVALALTEA  240
AHRGGSPQVS QTPSRRVEQK SSPIQSLERK HQMSETACAK FHDVSVDEEV LESSIESRGA  300
ENGEYARDNS SLMDTEGIST VKVFQKRKIF YRKRERVENV GNHQLDDGGE ACSGTEEGLS  360
FSSLKEKVDI DVTNEKLEKF SPKSQRKRNK KLFFGDETPA LNALQTLADL SLMMPISTME  420
SESSIQFKGE RMVADKNNKS ALLEATSTNH KRHQLKHSAV PEIEVSTSKK SKIGKESTKD  480
TNVLSESKGK LPFADTTWKK KRKSMGSKVA NAKLDSYPSG PLKDEALDDD NKPVVKGKHT  540
DQAFTLPKQL KTVKSSESSF CSDQKDLTVS TAEVPLLNEV SLPTKRSRRK MILQRTSLPK  600
EKSSDYILKS QPNKYSTLKA KVSSCLASNM VRRWFIFEWF YSAIDYPWFA KREFMEYLNH  660
VGLGNIPRLT RVEWSVIKSS LGKPRRFSEH FLCEERHKLE QYRESVRKHY TELRTGIRDG  720
LPTDLAKPLY VGQRVIALHP KTREIHDGSV LTVDYDKCRI QFDRPELGVE FVMDIDCMPL  780
NPSDNMPEAL RRHIGSQKAS FMNKEPQING NSNFGGCEMH SFPVKAKVAT VDNLCAQAGC  840
AQPCKVTHHQ AKEADIHAVS ELKRALDKKE TLLMELRSAN SDILENQNGI ECLKDSEVFK  900
KHYATVLVEL KEASGQVSDA MLQLRQRNTY RGNSLPPWMK PQASFNVHDD LPGMLDSSLT  960
QELGSTVVQV IKGSRLRAHA MVDAAFEALS LTKEGEDAFI KIGQALDSIN HQQLASKSRL  1020
PVIRSQEQVN VNGSFYHLSH STSGVSEPIL NDPSVPKPHN YSDKFDTELP SDLIASCVAT  1080
LIMIQTCTER QYPPADVAQI LDSAVTSLHP CCPQNLPIYR EIQMCMGRIK TQMLALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	583	590	TKRSRRKM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61131	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G234500.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235362	0.0	AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014628276.1	0.0	protein ALWAYS EARLY 2 isoform X1
TrEMBL	A0A0R0ESE2	0.0	A0A0R0ESE2_SOYBN; Uncharacterized protein
STRING	GLYMA20G37826.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Glyma.20G234500.6.p
Entrez Gene	100789533