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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G234500.4.p | ||||||||
Common Name | GLYMA_20G234500, LOC100789533 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 1126aa MW: 126716 Da PI: 9.2305 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.8e-10 | 46 | 82 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Glyma.20G234500.4.p 46 QWSKEELERFYEAYRKYGKD-WKKVAAFIR-NRSTEMVE 82 6*****************99.*********.***98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.87E-11 | 41 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.848 | 42 | 95 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-5 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-6 | 46 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-9 | 46 | 86 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.86E-7 | 47 | 81 | No hit | No description |
Pfam | PF06584 | 1.4E-32 | 626 | 726 | IPR033471 | DIRP domain |
SMART | SM01135 | 3.6E-56 | 626 | 727 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1126 aa Download sequence Send to blast |
MAPTRKSRSV NKRMSSSNDN SPEKDGINSN KNKLRKKKLT DKLGSQWSKE ELERFYEAYR 60 KYGKDWKKVA AFIRNRSTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSDS 120 ERESNDAPGS QKPVKRKHEE VQLSVSKDQS HSIASRDDCL SILKKRRFDG MQLKPYAVGK 180 RTPRVPVYKK DDTENYVSPY RRSLKSTIDA NDDEVAHVVA LALTEAAHRG GSPQVSQTPS 240 RRVEQKSSPI QSLERKHQMS ETACAKFHDV SVDEEVLESS IESRGAENGE YARDNSSLMD 300 TEGISTVKVF QKRKIFYRKR ERVENVGNHQ LDDGGEACSG TEEGLSFSSL KEKVDIDVTN 360 EKLEKFSPKS QRKRNKKLFF GDETPALNAL QTLADLSLMM PISTMESESS IQFKGERMVA 420 DKNNKSALLE ATSTNHKRHQ LKHSAVPEIE VSTSKKSKIG KESTKDTNVL SESKGKLPFA 480 DTTWKKKRKS MGSKVANAKL DSYPSGPLKD EALDDDNKPV VKGKHTDQAF TLPKQLKTVK 540 SSESSFCSDQ KDLTVSTAEV PLLNEVSLPT KRSRRKMILQ RTSLPKEKSS DYILKSQPNK 600 YSTLKAKVSS CLASNMVRRW FIFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW 660 SVIKSSLGKP RRFSEHFLCE ERHKLEQYRE SVRKHYTELR TGIRDGLPTD LAKPLYVGQR 720 VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMD IDCMPLNPSD NMPEALRRHI 780 GSQKASFMNK EPQINGNSNF GGCEMHSFPV KAKVATVDNL CAQAGCAQPC KVTHHQAKEA 840 DIHAVSELKR ALDKKETLLM ELRSANSDIL ENQNGIECLK DSEVFKKHYA TVLVELKEAS 900 GQVSDAMLQL RQRNTYRGNS LPPWMKPQAS FNVHDDLPGM LDSSLTQELG STVVQVIKGS 960 RLRAHAMVDA AFEALSLTKE GEDAFIKIGQ ALDSINHQQL ASKSRLPVIR SQEQVNVNGS 1020 FYHLSHSTSG VSEPILNDPS VPKPHNYSDK FDTELPSDLI ASCVATLIMI QTCTERQYPP 1080 ADVAQILDSA VTSLHPCCPQ NLPIYREIQM CMGRIKTQML ALIPT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 569 | 576 | TKRSRRKM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61131 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G234500.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235362 | 0.0 | AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006606519.1 | 0.0 | protein ALWAYS EARLY 2 isoform X5 | ||||
TrEMBL | A0A0R0EG91 | 0.0 | A0A0R0EG91_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G37826.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G234500.4.p |
Entrez Gene | 100789533 |