PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G234500.1.p

Common Name

GLYMA_20G234500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 1144aa MW: 128945 Da PI: 9.3422

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G234500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.6	1.9e-10	75	111	3	41
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Glyma.20G234500.1.p 75 QWSKEELERFYEAYRKYGKD-WKKVAAFIR-NRSTEMVE 111 6***************99.*****.*98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.94E-11	70	119	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.848	71	124	IPR017884	SANT domain
SMART	SM00717	1.1E-5	72	120	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-9	75	115	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.1E-6	75	114	IPR009057	Homeodomain-like
CDD	cd00167	8.40E-7	76	110	No hit	No description
Pfam	PF06584	1.4E-32	655	755	IPR033471	DIRP domain
SMART	SM01135	3.6E-56	655	756	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1144 aa Download sequence Send to blast
MGDKLFGACW LILRLFSMLC FLVQRHKSSM APTRKSRSVN KRMSSSNDNS PEKDGINSNK 60 NKLRKKKLTD KLGSQWSKEE LERFYEAYRK YGKDWKKVAA FIRNRSTEMV EALYNMNRAY 120 LSLPEGTASV VGLIAMMTDH YNVMEGSDSE RESNDAPGSQ KPVKRKHEEV QLSVSKDQSH 180 SIASRDDCLS ILKKRRFDGM QLKPYAVGKR TPRVPVYKKD DTENYVSPYR RSLKSTIDAN 240 DDEVAHVVAL ALTEAAHRGG SPQVSQTPSR RVEQKSSPIQ SLERKHQMSE TACAKFHDVS 300 VDEEVLESSI ESRGAENGEY ARDNSSLMDT EGISTVKVFQ KRKIFYRKRE RVENVGNHQL 360 DDGGEACSGT EEGLSFSSLK EKVDIDVTNE KLEKFSPKSQ RKRNKKLFFG DETPALNALQ 420 TLADLSLMMP ISTMESESSI QFKGERMVAD KNNKSALLEA TSTNHKRHQL KHSAVPEIEV 480 STSKKSKIGK ESTKDTNVLS ESKGKLPFAD TTWKKKRKSM GSKVANAKLD SYPSGPLKDE 540 ALDDDNKPVV KGKHTDQAFT LPKQLKTVKS SESSFCSDQK DLTVSTAEVP LLNEVSLPTK 600 RSRRKMILQR TSLPKEKSSD YILKSQPNKY STLKAKVSSC LASNMVRRWF IFEWFYSAID 660 YPWFAKREFM EYLNHVGLGN IPRLTRVEWS VIKSSLGKPR RFSEHFLCEE RHKLEQYRES 720 VRKHYTELRT GIRDGLPTDL AKPLYVGQRV IALHPKTREI HDGSVLTVDY DKCRIQFDRP 780 ELGVEFVMDI DCMPLNPSDN MPEALRRHIG SQKASFMNKE PQINGNSNFG GCEMHSFPVK 840 AKVATVDNLC AQAGCAQPCK VTHHQAKEAD IHAVSELKRA LDKKETLLME LRSANSDILE 900 NQNGIECLKD SEVFKKHYAT VSDAMLQLRQ RNTYRGNSLP PWMKPQASFN VHDDLPGMLD 960 SSLTQELGST VVQVIKGSRL RAHAMVDAAF EALSLTKEGE DAFIKIGQAL DSINHQQLAS 1020 KSRLPVIRSQ EQVNVNGSFY HLSHSTSGVS EPILNDPSVP KPHNYSDKFD TELPSDLIAS 1080 CVATLIMIQT CTERQYPPAD VAQILDSAVT SLHPCCPQNL PIYREIQMCM GRIKTQMLAL 1140 IPT*

Sequence ? help Back to Top

Protein Sequence Length: 1144 aa Download sequence Send to blast

MGDKLFGACW LILRLFSMLC FLVQRHKSSM APTRKSRSVN KRMSSSNDNS PEKDGINSNK  60
NKLRKKKLTD KLGSQWSKEE LERFYEAYRK YGKDWKKVAA FIRNRSTEMV EALYNMNRAY  120
LSLPEGTASV VGLIAMMTDH YNVMEGSDSE RESNDAPGSQ KPVKRKHEEV QLSVSKDQSH  180
SIASRDDCLS ILKKRRFDGM QLKPYAVGKR TPRVPVYKKD DTENYVSPYR RSLKSTIDAN  240
DDEVAHVVAL ALTEAAHRGG SPQVSQTPSR RVEQKSSPIQ SLERKHQMSE TACAKFHDVS  300
VDEEVLESSI ESRGAENGEY ARDNSSLMDT EGISTVKVFQ KRKIFYRKRE RVENVGNHQL  360
DDGGEACSGT EEGLSFSSLK EKVDIDVTNE KLEKFSPKSQ RKRNKKLFFG DETPALNALQ  420
TLADLSLMMP ISTMESESSI QFKGERMVAD KNNKSALLEA TSTNHKRHQL KHSAVPEIEV  480
STSKKSKIGK ESTKDTNVLS ESKGKLPFAD TTWKKKRKSM GSKVANAKLD SYPSGPLKDE  540
ALDDDNKPVV KGKHTDQAFT LPKQLKTVKS SESSFCSDQK DLTVSTAEVP LLNEVSLPTK  600
RSRRKMILQR TSLPKEKSSD YILKSQPNKY STLKAKVSSC LASNMVRRWF IFEWFYSAID  660
YPWFAKREFM EYLNHVGLGN IPRLTRVEWS VIKSSLGKPR RFSEHFLCEE RHKLEQYRES  720
VRKHYTELRT GIRDGLPTDL AKPLYVGQRV IALHPKTREI HDGSVLTVDY DKCRIQFDRP  780
ELGVEFVMDI DCMPLNPSDN MPEALRRHIG SQKASFMNKE PQINGNSNFG GCEMHSFPVK  840
AKVATVDNLC AQAGCAQPCK VTHHQAKEAD IHAVSELKRA LDKKETLLME LRSANSDILE  900
NQNGIECLKD SEVFKKHYAT VSDAMLQLRQ RNTYRGNSLP PWMKPQASFN VHDDLPGMLD  960
SSLTQELGST VVQVIKGSRL RAHAMVDAAF EALSLTKEGE DAFIKIGQAL DSINHQQLAS  1020
KSRLPVIRSQ EQVNVNGSFY HLSHSTSGVS EPILNDPSVP KPHNYSDKFD TELPSDLIAS  1080
CVATLIMIQT CTERQYPPAD VAQILDSAVT SLHPCCPQNL PIYREIQMCM GRIKTQMLAL  1140
IPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	598	605	TKRSRRKM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61131	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G234500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235362	0.0	AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006606518.1	0.0	protein ALWAYS EARLY 2 isoform X4
TrEMBL	K7N586	0.0	K7N586_SOYBN; Uncharacterized protein
STRING	GLYMA20G37826.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69
Representative plant	OGRP2479	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Glyma.20G234500.1.p