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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G168500.1.p | ||||||||
Common Name | GLYMA_20G168500, LOC100802242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 280aa MW: 29588.6 Da PI: 6.6371 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.6 | 1e-20 | 64 | 114 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g+ Glyma.20G168500.1.p 64 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 114 7********.**********7.....337*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-14 | 64 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.5E-33 | 64 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-39 | 64 | 127 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 64 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-23 | 64 | 122 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.8E-12 | 65 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.20E-15 | 72 | 123 | No hit | No description |
PRINTS | PR00367 | 5.8E-12 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MMSRFMHAPS PVLSSSHPHL GVGHKRERED DTGAGASGGV AIAAASSQTQ TQEIESAGGD 60 RRRRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTAEAA ARAYDEAALR FRGNRAKLNF 120 PENVVPVPPP PPVPDLPASA VAGSDSISGS GSVVAGFSPT LMQGAPFQGS SAFLRDYWGY 180 SQLLRSTGDF HGLDQWFFDS QMAAFQSSSS SLLPSPPPPS FSPSSASYPL FSSSQQMGIF 240 RPPGEQGHGG EDGGSGSEFS ELPPSTWSDT SGYPPPPPG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 65 | 124 | 6 | 66 | ATERF1 |
3gcc_A | 1e-22 | 65 | 124 | 6 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 64 | DRRRRY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.10100 | 0.0 | flower| leaf| meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G168500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011822 | 0.0 | AP011822.1 Glycine max DNA, BAC clone: WBb35C13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006606168.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_006606169.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_006606171.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_006606172.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_014627801.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
Refseq | XP_025983077.1 | 0.0 | ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A0R4J677 | 0.0 | A0A0R4J677_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G30835.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G43160.1 | 9e-11 | related to AP2 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G168500.1.p |
Entrez Gene | 100802242 |