PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G154400.1.p
Common NameGLYMA_20G154400, LOC100819475
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 327aa    MW: 34244.2 Da    PI: 6.8038
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G154400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.22.5e-37601602101
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 
                          a++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++   ++ +  +s+   ++ 
  Glyma.20G154400.1.p  60 AAAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTIPAIAVsVGGTLKIPTSSAARPEG 149
                          789*************************************************************99999555311222222221111122 PP

                  TCP  91 aksaakskksq 101
                          + +++k+++++
  Glyma.20G154400.1.p 150 EVDTPKKRRRR 160
                          22222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.51266120IPR017887Transcription factor TCP subgroup
PfamPF036347.1E-3066152IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEANPTHDGD DTSETPPPPM VDPSPSPPPQ MKEEVMDAEQ GGDTSLPMTV VPAHLPVSKA  60
AAKRPSKDRH TKVEGRGRRI RMPATCAARI FQLTRELGHK SDGETIRWLL EHAEPAIIEA  120
TGTGTIPAIA VSVGGTLKIP TSSAARPEGE VDTPKKRRRR ASNSEFIDVN ENQVSVSSGL  180
APIAQSAYGS GVGGGLVPLW HGNAAASGPF FMFPNASNPP QYWAIPATAA PFFNVQARPI  240
SGFVSALQMQ HDNHHSLNGA ASDSVNSSST VGSTMSTVTV TTSSGSGSAS GSSAATTTQM  300
LRDFSLEIYD KKELQFLGQP PPSSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159KKRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.206820.0root| seed coat
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00064PBMTransfer from AT5G51910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G154400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555366.10.0transcription factor TCP19
RefseqXP_006606088.10.0transcription factor TCP19
RefseqXP_014627767.10.0transcription factor TCP19
SwissprotQ9LT892e-76TCP19_ARATH; Transcription factor TCP19
TrEMBLK7N3M10.0K7N3M1_SOYBN; Uncharacterized protein
STRINGGLYMA20G29330.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.22e-74TCP family protein