PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G252600.3.p
Common NameGLYMA_19G252600, Glyma19g44190.2, LOC100781875
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 426aa    MW: 45699.6 Da    PI: 7.367
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G252600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.62.4e-22279341163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L aeN +Lk+e+++l++ ++k++ e+
  Glyma.19G252600.3.p 279 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLNAENATLKSEINRLTESSEKMRVEN 341
                          89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.0E-381100IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.0E-25133262No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-16273338No hitNo description
SMARTSM003382.6E-21279343IPR004827Basic-leucine zipper domain
PfamPF001703.4E-20279341IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415281344IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10282337No hitNo description
CDDcd147023.16E-21284332No hitNo description
PROSITE patternPS000360286301IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGNSEEEKST KTEKPSSPVT VDQANQTNQT NIHVYPDWAA MQAYYGPRVT MPPYYNSAVA  60
SGHAPHPYMW GPPQPMMPPY GPPYAAIYPH GGVYTHPAVP IGPHTHSQGV PSSPAAGTPL  120
SIETPPKSSG NTDQGLMKKL KEFDGLAMSI GNGHAESAEP GGENRLSESV DTEGSSDGSD  180
GNTSGANQTR RKRSREGTPT TDGEGKTEMQ GSPISKETAA SNKMLAVVTA GVAGTIVGPV  240
VSSGMTTTLE LRNPSSVHSK ASAPQPCPVL PAETWLQNER ELKRERRKQS NRESARRSRL  300
RKQAETEELA RKVESLNAEN ATLKSEINRL TESSEKMRVE NATLRGKLKN AQLRQTQEIT  360
LNIIDSQRAT PISTENLLSR VNNNSGSNDR TVEDENGFCE NKPNSGAKLH QLLDTSPRAD  420
AVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295301RRSRLRK
2295302RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.328760.0cotyledon| epicotyl| hypocotyl| leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G252600.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311450.0KT031145.1 Glycine max clone HN_CCL_210 BZIP transcription factor (Glyma19g44190.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554746.10.0common plant regulatory factor 1 isoform X2
RefseqXP_028218712.10.0common plant regulatory factor 1-like isoform X2
SwissprotQ990891e-146CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A445FLD80.0A0A445FLD8_GLYSO; Common plant regulatory factor 1 isoform A
TrEMBLK7N0910.0K7N091_SOYBN; BZIP transcription factor
STRINGGLYMA19G44190.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.12e-95G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]